BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471711
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15190.1 | Symbols: | Fasciclin-like arabinogalactan family... 1432 0.0
> AT1G15190.1 | Symbols: | Fasciclin-like arabinogalactan family
protein | chr1:5227053-5228202 FORWARD LENGTH=1150
Length=1150
Score = 1432 bits (775), Expect = 0.0
Identities = 987/1083 (91%), Gaps = 39/1083 (4%)
Strand=Plus/Plus
Query 1 TTCAGTTTATAAGCAGATA-ACACTAGACATATATTAAGCTCAAAATA-AAAATCTAGCA 58
||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||
Sbjct 4 TTCAGCTTATAAGCAGATATTGTTTAGACATATATT-AGCTCAACATATAAAATCTAGCA 62
Query 59 TTTTAGGAAGCGCGG---------aaaa---aa-aaaTTCTTGGACTGTAACAGAATCCA 105
|| |||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 63 TTATAGGAAGCGCGGAAAAAAACTAAAACCCAATAAATTCTTGGACTGTAACAGAATCCA 122
Query 106 GAACCTCCCAAGATTCGCATCCCCTATAAAACCAAATCATAACCGcttttttctttcttc 165
||| ||||||||||||| |||||||||||||| ||||||||||||||||||| | |||
Sbjct 123 GAAGTTCCCAAGATTCGCTTCCCCTATAAAACCCAATCATAACCGCTTTTTTC--T-TTC 179
Query 166 ttcttcttccattttactctcttcGACCTCAAAAATCACAAAAATGGCGAACATCTCGAG 225
||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 180 TTCGTCTTCCATTTTACTCTCTTCGACCTCACAAATCACAACAATGGCGAAAATCTCGAG 239
Query 226 CGCTTCTTGTTTCAGAGCCATCTTTCTCGGAGCTCTCATCATCCTCTGTCTTCCTCATCC 285
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CGCTTCTTGTTTCAGAGCCATCTTTCTCGGAGCTCTCATCATCCTCTGTCTCCCTCATCC 299
Query 286 TTCTACCGGCGTTCCTTTGGAAGAGTTAGAAAGAGCCATCGCCGTCCTCCGCGTCAGAGG 345
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 CTCCACCGGCGTTCCTTTGGAAGAGTTAGAAAGAGCCATCGCCATCCTCCGCGTCAGAGG 359
Query 346 CCGTGCTCTATTCGCCAACGCCATCATCACCTCCGATCTCCTCTTCGATCTACTCTCCGA 405
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TCGTGCTCTCTTCGCCAATGCCATCATCACCTCCGATCTTCTCTTCGATCTACTCTCCGA 419
Query 406 CGAGTCTCTCACTCTCTTCGCCCCCACCGATTCCATGCTCTTCGCTCTCGACATGACTCA 465
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 CGAGTCTCTCACTCTCTTCGCCCCCACCGATTCCATGCTCTTCGATCTCGACATGACTCA 479
Query 466 TTCTCTTCCCTTCTACGTTTCGactctccgcctccactccgtaccactccgcctctcact 525
||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 480 TTCTCTTCCGTTCTACGTTTCTACTCTCCGCCTCCACTCGGTACCTCTCCGACTCTCACT 539
Query 526 ctccgatctccgatctctccccaacgcctcctctATCCCGACGCTTCTCCCATCTCATCG 585
|| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 540 TTCTGGTCTCCGATCTCTCCCCAACTCCTCCTCTCTCCCGACGCTTCTCCCATCTCATCG 599
Query 586 CCTCCTTCTCACTAAGCTTTCTTCCTCCAACGACTCCATTTTTCTCGACGGTGTTCAACT 645
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 600 CCTCCTTCTCACTAAGCATTCTTCCTCCAACGATTCCATTTTTCTCGACGGCGTTCAACT 659
Query 646 TCTCCTCCCTGGTTTGTTCGATGGTCAACATATCGCTGTACACGGTCTCGCCGATCTTCT 705
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 660 TCTCATCCCTGGTTTGTTCGATGGTCAACATATTGCCGTACACGGTCTCGCCGATCTTCT 719
Query 706 TCCCCTCACCGCCCCTTCGTCTCCCAATCGTCTCGTGGAGGATTCGGCGGCACTGGCAGA 765
||||||||| || ||||| || ||||||||||||||||| |||||| ||||||||||| |
Sbjct 720 TCCCCTCACTGCTCCTTCATCCCCCAATCGTCTCGTGGAAGATTCGACGGCACTGGCAAA 779
Query 766 GTCACCGTGGTTTTTAGGTTCAAGATTTTCACCGGCACCAGAGCCTTACTTCGCCTTTAT 825
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCACCATGGTTTTTAGGTTCAAGATTTTCACCGGCACCAGAGCCTTACTTCGCCTTTAT 839
Query 826 GGATCTTTCACCAGCGGAGTCGCCGACTGTTGAGGAAGTTTCACCATCGCCGTCGTGGGG 885
||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 GGATCTTTCACCAGCAGAATCGCCGAGTGTTGAGGAAGTTTCACCATCGCCGTCGTGGGG 899
Query 886 AGAAG-A--------TTTCATCGTAGGCGATGAAGGAGGTCCGTTAGATGGGAGGAATAA 936
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAAGGAGAAGAAGATTTCATCGTAGGCGATGAAGGAGGTCCGTTAGATGGGAGGAATAA 959
Query 937 CGGCTTTTGATGTACACGTGTCGTGATCTCTGTAAAACACCTAACACGTGTC-----CT- 990
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 960 CGGCTTTTGATGTACACGTGTCGAAATCTCTGTAAAACACCTAGCACGTGTCTTTGACTC 1019
Query 991 T--GTAAAGTCAAAAGAGtcttttcttctttctttttt-GGTCAAAAAGAGTCCTTCCTT 1047
| ||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| ||
Sbjct 1020 TTTGTAAAGTCAAAAGAGTCCTTTCTTCTT-CTTTTTTTGGTCAAAA-GAGTCCTTTGTT 1077
Query 1048 TTT 1050
|||
Sbjct 1078 TTT 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5