BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471712
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15200.3 | Symbols: | protein-protein interaction regulator... 1349 0.0
> AT1G15200.3 | Symbols: | protein-protein interaction regulator
family protein | chr1:5228300-5231184 REVERSE LENGTH=1757
Length=1757
Score = 1349 bits (730), Expect = 0.0
Identities = 794/826 (96%), Gaps = 0/826 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCTAAGGGTTTCGAGCGAAATTTCTGAGCAGCGGCGACGATGGGAGACACCGCCT 60
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 124 CTTCTTCTAAGGGTTTCGAGCAAAATTTCTGAGCAACGGCGACGATGGGAGACACCGCCT 183
Query 61 TAGAGAAGACAGCCGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGCG 120
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 TGGAGAAGACAGCGGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGTG 243
Query 121 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAGCGTCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 244 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAACGTCG 303
Query 181 TTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGCAGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 304 CTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGTAGAAG 363
Query 241 ACGAGCCTCCTGCTAAACGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ACGAGCCTCCTGCTAAAAGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 423
Query 301 TTAGTAAGGATGGAGAATTGCCAGTTGATGGCAATGGAACCCAGGTTTTAGTTGGTGAGA 360
||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 424 TTAGTAAAGATGGAGAATTTCCAGTTGATGGTAATGGAACCCAGGTTAAAGTTGGTGAGA 483
Query 361 ACGGGACTTCTGATCAAAGTGACAAGAAGCTATCTGGTCATCATCGTGGAAGTTGGTCCC 420
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 484 ATGGGACTTCTGATCAAAGTGACAAGAAGCAATCTGGTCTTCATCGTGGAAGTTGGTCCC 543
Query 421 AGAGAGATGCAGAACAACGAGGGACCAAGAAGGGTTACGAAGCTTTTGCATTGCCGGAGC 480
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 544 AGAGAGATGCAGAACAACGACGGACCAATAAGCGTTACGAAGCTTTTGCATTGCCGGAGC 603
Query 481 CTTCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTGCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 663
Query 541 TGCTGGGGAATCTTCTAGGAACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 600
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TGCTAGGGAATCTTCTAGGGACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 723
Query 601 GAACAGATGCATACGCCCGACGGACTGCAACTCTACAAAGGGCTGAGGAAAAGGCTCGTG 660
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 724 GAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGGGCGGAGGAAAAGGCTCGTG 783
Query 661 AAGAAAGTGAACGACTGAGGTTGCAGGAGCGTGAAAATCTGACTGAAAAGAGGAGAAGAG 720
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 784 AAGAAAGTGAACGACTGAGGCTGCAGGAGCGTGAAAATTTGACTGAAAAGAGGAGAAGAG 843
Query 721 ATCTTACTCTTCGAGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAGTTGGAATTGCTTT 780
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 844 ATCTTACTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTT 903
Query 781 TCCTTCAGTGGAGTGAGCACCAAAAGAAACTTACCAATTTTATAAG 826
||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 904 TCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAG 949
Score = 902 bits (488), Expect = 0.0
Identities = 586/630 (93%), Gaps = 19/630 (3%)
Strand=Plus/Plus
Query 821 TATAAGGACTAAAGCAGAGCCACGGATATACTATGCACTAGTGAAACCTTTGGAAGAAGA 880
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1086 TAT-AGGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGAAGA 1144
Query 881 TACAAGTGAGGTAGAGCAACAGAAAGAGCAGACATTCTTAGAATGGAAGGCGGCAAGGAG 940
||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1145 TACAAGTGAGGTAGAACAACAGAAAGAGCGGACATTCTTAGAATGGAAGGCAGCAAGGAG 1204
Query 941 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGAAATGTTGAGAA 1000
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1205 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGTAATGTTGAGAA 1264
Query 1001 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCGAGGAAAGCAAACAACGAGGGTATTAA 1060
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1265 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCAAGGAAAGCAAACAACGAGGGTATGAA 1324
Query 1061 TTTGCAGGAAACAATGGACAAGGAATTAGAGACACATAGGATGGAGCACGGGCCAAAGAA 1120
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1325 TTTGCAGGAAACGATGGACAAGGAATTAGAGACTCATAGGATGGAGCATGGGCCAAAGAA 1384
Query 1121 GAGAAAGATTCCAGGAGGAG-A-T-G-A-A-GA-G--GAAGAAGATGAAGTGGAGGATAT 1171
||||||||| || ||||||| | | | | | || | |||||||||||||| ||||||||
Sbjct 1385 GAGAAAGATACCTGGAGGAGGAGTAGGAGATGAAGATGAAGAAGATGAAGTAGAGGATAT 1444
Query 1172 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTGCTAGAGGAGGGAGGAGATGGAAA 1231
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1445 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTACTGGAGGAGGGAGGAGATGGAAC 1504
Query 1232 CATCAAGGAGGAAGTGGCTACTGATACAGTAAAAGCAGAAGCAGTGGAGGAAGACATTAA 1291
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1505 CATCAAGGAGGAAGTGGCAACTGATACAGTTAAAGCAGAAGCAGTGGAGGAAGATATTAA 1564
Query 1292 ACATGAGGTTGTCTAAGTCATATAGTTTGTTTGTTCTTGAAATGTGGTGGAGTTACTTTG 1351
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1565 ACATGAGGTTCTCTAAGTCATATAGTTTGTTTGTTCTTGAAATTTGGTGGAGTT--T--G 1620
Query 1352 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGCTGT-GTAAGGTGGAATTTTATGGTAA 1410
|||||||||||||||||||||||||||||||||| || |||| ||| |||| |||||||
Sbjct 1621 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGC-GTTGTAACGTG-AATT--ATGGTAA 1676
Query 1411 TTTGTAGGAAAGATTTGCCTTTCTGCTATA 1440
||| |||||||||||||||||| |||||||
Sbjct 1677 TTTCTAGGAAAGATTTGCCTTTGTGCTATA 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5