BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471717
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15220.1 | Symbols: ATCCMH, CCMH | cytochrome c biogenesis p... 1064 0.0
> AT1G15220.1 | Symbols: ATCCMH, CCMH | cytochrome c biogenesis
protein family | chr1:5240199-5241538 REVERSE LENGTH=1173
Length=1173
Score = 1064 bits (576), Expect = 0.0
Identities = 704/762 (92%), Gaps = 24/762 (3%)
Strand=Plus/Plus
Query 247 CAGTGCAATGGAGAAAACAGACGAAGAGAGGAAGAAGGCTCAGATGCTGGACGCTCGGGC 306
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CAGCGCAATGGAGAAAACAGACGAAGAGAGGAAGAAGGCTCAGATGCTGGACGCTCGGGC 474
Query 307 CAGAAACATTAGCCACAATGTTCGATGCACTGAGTGTGGAAGTCAGTCCATTGAAGACTC 366
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 CAGAAACATTAGCCACAATGTTCGCTGCACTGAGTGTGGAAGTCAGTCCATTGAAGACTC 534
Query 367 GCAGGCAGATATCGCTATTCTCCTTAGACAGTTGATCCGTGATGAGATAGGAGCTGGAAA 426
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 535 GCAGGCAGATATCGCTATTCTCCTTAGACAGCTGATCCGTAATGAGATAGGAGCTGGAAA 594
Query 427 AACTGACAAAGAGATCTACAATAAGCTCGAGGATGAGTTTGGGGAGACTGTGCTTTATGC 486
|||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||
Sbjct 595 AACTGACAAAGAGATCTACAGTAAGCTGGAGGATGAATTTGGGGAGACAGTGCTTTATGC 654
Query 487 CCCAAAATTTGATTTGCAGACCGCGGCCTTGTGGCTCACACCGGTTATAATTGCTGGAGG 546
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 655 CCCAAAATTTGATTTGCAGACCGCAGCCTTGTGGCTCACACCGGTTATAATTGCTGGAGG 714
Query 547 TACCGCTGCAGGGTTGGTTTACCAGAAGCACAGGCAAAGAAAAAATGTAGACATCATGGC 606
|||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 715 TACCGCTGCAGGAATAGTTTACCAGAAGCACAGGCTAAGGAAAAATGTAGACATCATGGC 774
Query 607 GTTGAACCTTATTCGAGGTGTACCATTGACTCCAAAAGAGAGAGTTACCATTCTAGATGT 666
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 GTTGAACCTTATTAGAGGTGTACCATTGACTCCAAAAGAGAGAGTTACCATTCTTGATGT 834
Query 667 TCTTATTCCACCTTCCCCTCCTCCTCAGGGAGTTGCTTCCCGATTGAGGAGATGGCTAAA 726
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 835 TCTTATTCCACCTTCCCCTCCTCCTCAGGGAGTTGTTTCCCGATTGAGGAGATGGCTCAA 894
Query 727 CCGTTAGTTCCCGTATCTCCTTAGCTCTCTTGTTCTTGGC-C-AA------------A-- 770
||| |||||||||| ||||||||||||||||||||||||| | || |
Sbjct 895 CCGGTAGTTCCCGTGTCTCCTTAGCTCTCTTGTTCTTGGCTCGAATCTTGTTGTGTTAAC 954
Query 771 ---TAAACAATGTGTTGAAAGGAGTAAGTACACATTGATTGTCTAAGAGAAACAGATAGG 827
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 955 AAGTAAACAATGTGTTGAAAAGAGTGAGTACACATTGATTGTCTTGGAGAAACAGATAGG 1014
Query 828 GACTGCTTTGCATCCGTTACAAGCAAATGGATTCTTCTATAGAATTATCTTGGGATGAGA 887
||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1015 GACTGCTTTGCATCCATTACAAGCAAATGGATTCTTCTGTAGAAG-ATCTTGGGATGAGA 1073
Query 888 TATGTAT-GAAGAAAGAATTATTGAAAGTGTGATACTTGTTGTATCTTTGCTGTGTGCTT 946
||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1074 TATGTATCGA-GAAAGCATTATTGAAAGTGTGATACTTGTTGTACCTTTGCTGTGTGATT 1132
Query 947 GAATACAGAGAGTGGGTCGTT-GATTATGTTACTTCCGGCAC 987
|||||||||||| |||||| | | |||| |||||| ||||||
Sbjct 1133 GAATACAGAGAGCGGGTCGATAG-TTATATTACTTTCGGCAC 1173
Score = 333 bits (180), Expect = 2e-90
Identities = 231/254 (91%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 1 GCACGCTCCTTCACGCGCCTTTTCGATTTCACATTCGGATCCGATTTGTTCACCCGCCGG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 GCACGCTCTTTCACGCGCCTTTTCGATTTCACATTCGGATCCGATTTGTTCACCCGCCGA 104
Query 61 AGATCCACCGGCATCATCTCTAAACGGCTCTGGCGAAGAAGGATCGGCGC---TACTGCT 117
||||||||||||||| |||||||||||||||| || |||||||||||||| || ||||
Sbjct 105 AGATCCACCGGCATCTTCTCTAAACGGCTCTGTCG-AGAAGGATCGGCGCTATTATTGCT 163
Query 118 GGAGGACGATAAGCTGTTTACGTTTTACAAGTAAACGGA-TAAATTTCCAAAGCGAAAGG 176
|||||||||| | ||||||| |||||| |||||||||| | ||||||| ||||||||||
Sbjct 164 GGAGGACGATTGGGTGTTTACTTTTTACTAGTAAACGGAGT-AATTTCCCAAGCGAAAGG 222
Query 177 TTTCATTTTTGAGCTCCACGTTGAACGAACTAAACGGTTTCTCGGA-TCTCACTCTTGCT 235
||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||
Sbjct 223 TTTCATTTTTGAGCTCCACGTTGAACGAACTAAGCGGTTTCTCGGAGT-TC--TCTTGCT 279
Query 236 TCCTCTCGACCCAG 249
||||||| ||||||
Sbjct 280 TCCTCTCCACCCAG 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5