BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471720
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15260.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1199 0.0
> AT1G15260.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G16070.1);
Has 28 Blast hits to 28 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5249760-5250573
FORWARD LENGTH=814
Length=814
Score = 1199 bits (649), Expect = 0.0
Identities = 761/813 (94%), Gaps = 15/813 (2%)
Strand=Plus/Plus
Query 1 ATGTTAGGTTTCCTTTTGAGCTCCCTAGTAACATAAATATGGTTATCTTCTCaaaaaaaT 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGGTTTCCTTTTGAGATCCCTAGTGACATAAATATGGTTATCTTCTCAAAAAAAT 60
Query 61 GAGCAGCAAGAAAGATGATGAAACCTACATCAAAATCAATTCAGAGAGTTGGACGTTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GAGCAGCAAGAAAGATGATGAAACCTACATCAAAATCAATTCAGAGAGTTGGTCGTTTCT 120
Query 121 TGAAGAAGACTCTTGGGAGCATCAAGTCCACTATCTGCTCTGGTGATTACAAAAACTTAC 180
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TAAAGAAGACTCTTGGGAGCATCAAGTCCACTATCTGCTCTAGTGATTACAAAAACTTAC 180
Query 181 CTAACAACACTCCTCTCTTGAGCCCCAACTCCTGCAGCCGCGGCTATCCAGAAGATTCCC 240
||||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 181 CTAACGACACTCCTCTCTTGAGCCCTTACTCCTGCAGCCGCCGCTGTCCAGAAGATTCCC 240
Query 241 AAACC-AAA-----GAAACCTACACCGTTCTCTGTTGTGACACGGCTGTGGCAGATACAA 294
||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAACCCAAACCAAAGAAAGCTACACCGTTATCTGTTGTGACACGGCTGTGGCAGATACAA 300
Query 295 CACACCAGAAGAGTCTCAGCAACCAACCTAAAAAGAAACCGAAGAAAATCGCAGTGCCAT 354
|||||||||||||||||| |||||||| ||||||||||||||||||| |||| | |||||
Sbjct 301 CACACCAGAAGAGTCTCAACAACCAACATAAAAAGAAACCGAAGAAAGTCGCTGAGCCAT 360
Query 355 TCGAGGATGCTAAGAAAAGAGGTGACGCATTGGCGCAAAAGATGAAAGATCTCAACATGG 414
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 361 TCGAGGATGCAAAGAAAAGAGGTGACGCGTTGGCGCAAAAGATGAAAGATCTCAATATGG 420
Query 415 TGGATCTGAGAGACGTGGATCACGCATTGGATGTAAGGGAAGCGCTTCGATGCTATTCAA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGATCTGAGAGACGTGGATCACGCATTGGATGTAAGGGAAGCGCTTCGATGCTATTCAA 480
Query 475 GCATCAGAAGTCCTGTGTACCTTGACATTGTTGACAATTTCTTCACAGACATGTATTACG 534
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCATCAGAAGTCCTGTGTATCTTGACATTGTTGACAATTTCTTCACAGACATGTATTACG 540
Query 535 AGTTCTCTGATCCGCGCACCTCTGCTAAGATCAACGGTTCAAGAAAAAAGGCAGGCTCCT 594
||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 541 AGTTCTCTGATCCTCGTACCTCTGCTAAGATCAACGGTTCAAGGAGAAAGGCAGGCTCCT 600
Query 595 TCAGGCTCTAAAGTTCCTCTGAATGAGCTTTGCTTTGCTTTCATGGGCTATATGTAGCTA 654
||||||| ||||||||||||| || ||||||||||| | | ||||||| ||||| |
Sbjct 601 TCAGGCTTTAAAGTTCCTCTGGATCAGCTTTGCTTT-CA--C--GGGCTATCTGTAGTTC 655
Query 655 TTTCATCTATCGAGTATGCACTTCTTAAGAACAGTTGTTAGCCATTACACACACCGATTT 714
|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 656 TTTCATCTATAGAGTATGCACTTCTTAAGAACAGT-GTTAACCATTACACACACCGCTTT 714
Query 715 GGTAAAATCACCTGTCACCAACCTCAGTTTCTACCTCATCTTGTAGAGTCAAGTTACCCT 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 715 GGTAAAATCACCTGTCACCACCCTCAGTTTCTACCTCATCTTGTAGAGTCAAGTTACGCT 774
Query 775 CCTATTCTCAACTA-T--CAATGCAACATATTT 804
|||||||||||||| | |||||||||||||||
Sbjct 775 CCTATTCTCAACTACTATCAATGCAACATATTT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5