BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471721

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15270.1 | Symbols:  | Translation machinery associated TMA7...   643    0.0  


> AT1G15270.1 | Symbols:  | Translation machinery associated TMA7 
| chr1:5250650-5252121 REVERSE LENGTH=479
Length=479

 Score =  643 bits (348),  Expect = 0.0
 Identities = 387/404 (96%), Gaps = 10/404 (2%)
 Strand=Plus/Plus

Query  1    ATTCGATACCGTCTGCAACTCTCAGCTACTTTTTCCCCAAATTCTGAGCTCAACATCGAA  60
            |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct  22   ATTCGATACCGTCTGCAACTCTCAGCTACTTTTTCCCC-AATTTTGAGCTCAACATCGAA  80

Query  61   CCCTAGCTCAACGAACCAATCAATCATGTCTTCCAAGCAAGGAGGAAAGGCGAAACCTTT  120
            ||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||
Sbjct  81   CCCTAGCTCAACGAA-C---CAATCATGTCTTCCAAGCAAGGAGGAAAGGCGAAACCTTT  136

Query  121  GAAGCAGCCAAAAGCTGATAAGAAGGAATACGACGAGACGGACTTAGCTAACATTCAGAA  180
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  137  GAAGCAGCCTAAAGCTGATAAGAAGGAATACGACGAGACTGACTTAGCTAACATTCAGAA  196

Query  181  GAAGAAAGATGAGGAAAAGGCCCTTAAAGAGCTTAGAGCCAAGGCATCGCAGAAGGGATC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  197  GAAGAAAGATGAGGAAAAGGCCCTTAAAGAGCTTAGAGCCAAGGCATCGCAGAAGGGATC  256

Query  241  CTTTGGAGGTTCTGGACTTAAGAAGAGCGGCAAGAAATGATCCGTTTTATCCATGAAGTG  300
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  257  CTTTGGAGGTTCTGGACTTAAGAAGAGTGGCAAGAAATGATCCGTTTTATCCATGAAGTG  316

Query  301  TGTT--AAAATGCAAATTTATCAAGTGAAAAAA-CAGATAATCGTGTCATGATGTAACTT  357
            ||||  ||||||||||||||||||||||||||| ||||||||| |||  |||||||||||
Sbjct  317  TGTTTTAAAATGCAAATTTATCAAGTGAAAAAAACAGATAATCCTGTGTTGATGTAACTT  376

Query  358  TTTATCATAATTCGAGAGAAGAGTAACTTCGCTTCTCCATACAT  401
            ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  377  TTTATCATAATTCGAGA-A-GAGTAACTTCGCTTCTCCATACAT  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5