BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471723
Length=2239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15280.2 | Symbols: | CASC3/Barentsz eIF4AIII binding | chr... 2785 0.0
> AT1G15280.2 | Symbols: | CASC3/Barentsz eIF4AIII binding | chr1:5252317-5256751
FORWARD LENGTH=2303
Length=2303
Score = 2785 bits (1508), Expect = 0.0
Identities = 2076/2327 (89%), Gaps = 131/2327 (6%)
Strand=Plus/Plus
Query 1 TTCATTGGAAACCCCCAAAATCGCAGAAGAACGAACGCCTCTGGGAGCTGAGATAGGGTT 60
|||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||
Sbjct 17 TTCATTGGAAACCCCCAAAATCGC---TGAA-GAACGCCTCT-CGAGCTCAGATAGGGTT 71
Query 61 TAGGTACGTTTCTAGAGAGAATTT-ATGGCGAC-TGCTGAAGCGGCGGAATATGAGAGTG 118
|| || ||||||||||||||||| |||||||| | ||||| ||||||||||||||||
Sbjct 72 TA--TAGGTTTCTAGAGAGAATTTCATGGCGACAT-CTGAA---GCGGAATATGAGAGTG 125
Query 119 ATCCCGAGGAGCTGAACCGCTCCTTGGCCACGAGGAGGAGAGAAGCAAGTGATGACGATA 178
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 126 ATCCCGAGGAGCTGAACCGCTCCTTGGCGACGAGGAGGAGAGAAGCGAGTGATGACGATA 185
Query 179 GTGATGATGCTGAAT-CTGATAGAGATGTTG-AAAATAAGAGGGCTGAGGTTGATTCTGA 236
||||||||| || || ||| |||||||| || ||||| ||||||||| ||||||||||||
Sbjct 186 GTGATGATGATG-ATGCTGTTAGAGATG-TGAAAAATCAGAGGGCTGTGGTTGATTCTGA 243
Query 237 CCTATCTGATG-AGCAGATTGATACTGTCAAGTATGATAATGACGAAGATGGGGAGGATA 295
||||||||||| || || ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 244 CCTATCTGATGAAGAAG-TTGGTACTGTGAAGTATGATAATGACGAAGATGGGGAGGATA 302
Query 296 GTTTTgaggaggaggaggaggaggagggaCGTGGTGGAATCGATGATGACAAGA------ 349
||| |||||| || |||||||| || | |||| ||||||||| |||| ||||
Sbjct 303 GTTATGAGGATGATGAGGAGGA-AAGTG--GTGGAGGAATCGATAATGATAAGAGTGGTG 359
Query 350 --G-G-AGTA-G-T-GTG--ATGAATGGAGACGAAGAAAAAGAAAAGGAGAAGCAACAAG 400
| | || | | | ||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct 360 TGGTGAAGGAGGCTGGTGATATGAATGGAGAGGAAGAAAATGAAAAGGAGAAGTTACAAG 419
Query 401 TTGCAGTTCCCACAGGTGGAGCTTTTTATATGCATGATGATAGGTTTCAGGAAATGTCTG 460
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGCTGTTCCCACTGGTGGAGCTTTTTATATGCATGATGATAGGTTTCAGGAAATGTCTG 479
Query 461 CTGCCGGAAACAGGCGAATGCGTGGTGGGAGAAGACAGTGGGGATCTGGAGAGGAAAGAA 520
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 CTGGCGGAAACAGGCGAATGCGTGGTGGGAGAAGACAGTGGGGCTCTGGAGAGGAAAGAA 539
Query 521 AATGGGGACATGACAAATTTGAAGAGATGAATACTGGAGAAAAACATTATGATCAGAGGA 580
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 540 AATGGGGACATGACAAATTTGAAGAGATGAATACTGGGGAAAAACATTCTGATCAGAGGA 599
Query 581 TGTCTAGAGGCCGACTCAGAGGTCGTGGTCGGGGTAGGGGACAAGGGCGTGGATACGCTA 640
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGTCTAGAGGCCGATTCAGAGGTCATGGTCGGGGTAGGGGACAAGGGCGTGGATACGCTA 659
Query 641 GAGGGAGCAGTTCTAACACATTAGCCAGTAATGGACAGCAAATTTATGTTCCTAAAGCTG 700
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 660 GAGGGAGCAGTTCTAACACATTAACCAGTAGTGGACAGCAAATTTATGTTCCTAAAGCTG 719
Query 701 TCTCACGAGGGAGAGGGCCTAGGAAATCCGAGACTCCCCTGAGGAATGAAAAGCTAGCAA 760
|||||||||||||||| || ||||||||||| |||||||||||||||||||| | ||||
Sbjct 720 TCTCACGAGGGAGAGGACCCAGGAAATCCGACACTCCCCTGAGGAATGAAAATCAAGCAC 779
Query 761 ATTCCGAGCAAAGCAAACAGTTACGAAATTCTAATGGGTCTCAAAACTCTCGTGAGAAAA 820
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTCTGAGCAAAGCAAACAGTTACGAAATTCTAATGGGTCTCAAAACTCTCGTGAGAAAA 839
Query 821 TG-------TC-A--CAC--CGTTCACCAACTGCCCCTGCTAAAACTGAGAATCAAGGTG 868
|| || | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCCACACCTCGATTCACGGCGTTCACCAACTGCCCCTGCTAAAACTGAGAATCAAGGTG 899
Query 869 TCCATGCCAAAAAGAATGTAGCAGCGTCAAGTTTGAGCTCTGCTTCTCCTCCATTTTATC 928
||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||
Sbjct 900 CCCATGCCAAAAAGAATGTAGCTGTGTCAAGTTTGAGTTCCGCTTCTCCTCCATTTTATC 959
Query 929 CTTCAGTGACC-TCCAGTAATGTGGTACATGGTATACAAGTTGGTATGGAAAGACTCCAC 987
|||||| | || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 CTTCAGCG-CCGTCCAGTAATGTGGTACATGGTATACAAGTTAGTATGGAAAGACTCCAC 1018
Query 988 ACGAATGAAAGTGGTG-CGCCTTCTGGGAAGAAGTATAGGAATACAAAGTCCGGTTTTTC 1046
|| |||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1019 ACAAATGAAAGTG-TCACGCCTTCTGGGAAGAAGTATAGGAATACAAAATCCGGTTATTC 1077
Query 1047 ATCAGTTTGGACTGCCAAGACTCTTCAGTCCTCTAATCAAGGTAGAGATGCACCTGCTGC 1106
| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1078 ACCAGTTTGGACTGCCAAGACTCTTCAGTCCACTAGTCAAGGTAGAGGTGCACCTGCTGC 1137
Query 1107 TGGGAACATGTTTTACCCGCAATCTCATAGTCAAGGTGACAGATTTTCATCACAAATGCA 1166
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 TGGGAACACGTTTTACCCGCAATCTCATAGTCAAGGTGACAGATTTTCATCACCAATGCA 1197
Query 1167 ACTCAATGGAGATTCAAAAGGCACTGGCCAAAGCTTTATTAGACCTTCTGGCCAGGGTTT 1226
||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1198 ACTCAATGGAGATTCAAAAGGCACTGGCCAAAG----A-----CCTTCCGGCCAGGGTTT 1248
Query 1227 TGATCAGCACTCTGCTGTTGTCAGATCATTGTCTTCCTCTCCCCAGAAAACTAGCTTATC 1286
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TGATCAGCACTCTGCTGTTGTTAGATCATTGTCTTCCTCTCCCCAGAAAACTAGCTTATC 1308
Query 1287 AAGAAATCAGTATCCTCCT-AGTGAAGTAGAATCTGCATCGAAAACAGGTTCATTGATTG 1345
|||||||| |||||||||| | |||| |||||||| ||||| |||||| | |||||||||
Sbjct 1309 AAGAAATCGGTATCCTCCTGA-TGAAATAGAATCTTCATCGGAAACAGCTGCATTGATTG 1367
Query 1346 CTAAAGGAAAAGAGACTATCCGGCCTAGTGGAAGCGGCTCTTTTATGTATAGTGGATCCC 1405
|||||||||||| |||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1368 CTAAAGGAAAAGGGACTCTCAGGCCTGGTGGAAGCAGCTCTTTTATGTATAGTGGATCCC 1427
Query 1406 AAATGATGGGGCGGCCAGAAAGTCTGGCATCTGCGGACAATTCTAATTTCCATACTTTTC 1465
||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||
Sbjct 1428 AAATGATGGGGCGGCCAGAAAGTTTGACATCTGCTGACAATTCTAATTTCCCTACTTTTC 1487
Query 1466 TGCCTGTTATGCAATTTGGTGGTCAGCATGGTGGGGTTCCGACTTTAGGAATGGCTTATC 1525
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1488 TGCCTGTTATGCAATTTGGTGGTCAGCATGGTGGGGTTCCGACTTTTGGAATGGCTTATC 1547
Query 1526 CAGGATATGTCCAGTCTGAAAATGGTGTTAGAAATCCGGAGATGACATGGATGCCAGTTT 1585
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CAGGATATGTCCAGTCTGAAGATGGTGTTAGAAATCCGGAGATGACATGGATGCCAGTTT 1607
Query 1586 T-GAATGGTCCAGGAGCTTTAGGGGCTTCATACAGTCCACTA---TATGCGGCTAATCAA 1641
| | ||||||||||||||||||||||||||||||||||| | ||||||||| | |||
Sbjct 1608 TAGC-TGGTCCAGGAGCTTTAGGGGCTTCATACAGTCCACCACCATATGCGGCTCACCAA 1666
Query 1642 GCAAACAAGCCAGGGTTA--T-C-T-T-C----TTC-CAAAGACAAT-A-A-TAGCGCAA 1687
||| |||| ||||||||| | | | | | ||| | | | ||| | | |||| |||
Sbjct 1667 GCACACAACCCAGGGTTACCTTCCTCTGCGGGATTCTCCA-G-CAAAGACAGTAGCACAA 1724
Query 1688 ATACTCTTAATGACCTCGTCAAACCCACGGAAAGACCTGAGGTTGCAGAGAATGGGGTTT 1747
|||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1725 ATACCCTTAATGACCTGGTCAAACCCATGGAAAGTCCTGAGGTTGCAGAGAATGGGGTTT 1784
Query 1748 CACAACGGCAAGGCAACAACCCAAGCAAGCAGCCTCGTAGGTACTCGGAGATGACCTTTA 1807
|| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 CAGAACGGCAAAGCAACAATCCAAGCAAGCAGCCTCGTAGGTACTCGGAGATGACCTTTA 1844
Query 1808 GCAAGTGATAACATTTGTGAGAATTTAAGAAGAGAGTTTAGGGACTCCTTGACGCAAGGC 1867
|||||||| ||||||||||||||||||||||| || ||||||||| ||||| |||| |||
Sbjct 1845 GCAAGTGAAAACATTTGTGAGAATTTAAGAAGGGACTTTAGGGACACCTTGGCGCAGGGC 1904
Query 1868 TATGTTGCTTCTCCAAGCTTTGTTACAGAACACTTTTAAGGCCGCAATTGTTCCTGAAAA 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TATGTTGCTTCTCCAAGCTTTGTTACAGAACACTTTTAAGGCCGCAATTGTTCCTGAAAA 1964
Query 1928 TCCTAGGTTTATAAGGGA-GGGaaaaaaa--CAAAAGATAATACTA-CGACTACTAGTAG 1983
|| ||| ||||||||||| |||||||||| |||||||||||| || |||||||||||||
Sbjct 1965 TCTTAGTTTTATAAGGGAAGGGAAAAAAAAACAAAAGATAATAGTAACGACTACTAGTAG 2024
Query 1984 CAAATAGAATGGAGATGGGACGTGGTGGCTCATATAAAGCTATGG----T-T--T----- 2031
||||||||||||||| ||||||| ||||||||||||||||||||| | | |
Sbjct 2025 CAAATAGAATGGAGAAGGGACGTAGTGGCTCATATAAAGCTATGGGAGATGTAATGTATT 2084
Query 2032 -------CGTGTTTTCGGTCATCTGCTTGTTTGGTAATTTACCATTT-AAGCTATTTTCA 2083
||||||||| ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 2085 TGTGTTTCGTGTTTTCCGTCATCTGCTTGTTTGGTATTTTACCATTTTAAGCTATTTTCA 2144
Query 2084 GGAAACTAGTTGTC-TAAAACTTTGGTCAGCAGCCTGTTTGGTGTGTCttttattttatt 2142
||| |||||||||| |||| |||||||||||| ||||||| ||||||||||| |||| |
Sbjct 2145 GGAGACTAGTTGTCCTAAA-CTTTGGTCAGCATCCTGTTTTGTGTGTCTTTT-TTTT-T- 2200
Query 2143 ttttCCGAAGAATCTTATCTAAAGCACTCTATTTTGAGCATGTATATATTTGTTGC---G 2199
|||| |||||| |||||||| |||| ||||||||||||| |||||||| || |
Sbjct 2201 ----CCGA-GAATCTAATCTAAAGT-CTCTCTTTTGAGCATGTAAATATTTGTCGCAATG 2254
Query 2200 --A----AGTT-TTTTCCTTCCTATGGAATCACATAAATTGGAGCTT 2239
| | || ||||| ||||||||||||||||| ||| |||||||
Sbjct 2255 TTATTTCATTTGTTTTC-TTCCTATGGAATCACATGAATAGGAGCTT 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111093806085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5