BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471732
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1199 0.0
> AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G15770.2);
Has 148 Blast hits to 148 proteins in 25 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:5278260-5279873
REVERSE LENGTH=945
Length=945
Score = 1199 bits (649), Expect = 0.0
Identities = 829/909 (91%), Gaps = 40/909 (4%)
Strand=Plus/Plus
Query 1 AAGGCAAATCATTTCAAAGCGAAAGGCAAAGGGA-AAACGTAAAGAGGGCAGAGCCCTTC 59
|||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct 9 AAGGCAAATCATTTCAAAGCGAAAGG-AAAAGGAGAAACGTAAAGAGGGCAAAGCCCTTC 67
Query 60 TTCTTCTTCTCCGAG-A--AG--G-AG-CT----T-----TTC----GATGCCCAGTTGA 99
|||||||| | |||| | || | || || | ||| |||||||||||||
Sbjct 68 TTCTTCTTGTTCGAGAAGGAGCTGCAGCCTCAGATAAGGATTCTTTTGATGCCCAGTTGA 127
Query 100 TAAAGGAAGCGACTTTATTTTAACCAACGAGATTTTATCACCAGGATCATTGATCACCCT 159
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 128 TAAAGGAAGCGACTTTATTTTAACCAACGAGATTTTATCATCAGGATCATTGATCACCCT 187
Query 160 CTTGAGAACATCTCGAGCTTTCCCAGATCTATCGGAGCTCCTGGGTTTATAAATCGCTGA 219
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 CTTGAGAACATCTCGAGCTTTCCCAGATCTATCTGAGCTCCTGGGTTTATAAATCGCTTC 247
Query 220 CTTCACAAATCGATGGGAGCAGTGGCTGCGTGGGTTGCTACAGAGAACACAGATCAACTG 279
||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTCACATATCGAT--G-G--GTGGCTGCGTGGGTTGCTACAGAGAACACAGATCAACTG 302
Query 280 CCACCACTCTGAAGGATCCACCCTCCAATTCCATTGCTCGACCGTGTAAGAAACCGAGTG 339
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 303 CCGCCAGTCTGAAGGATCCACCTTCCAATTCCATTGCTCGACCGTGTAAGAAACCGAGTG 362
Query 340 TCTCCGAAGATTTTTGGTCAACAAGCACTGTTGATATGGACAACATCACCTTCCCTTCAC 399
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 363 TCTCTGAAGATTTCTGGTCAACAAGCACAGTTGATATGGACAACATCACCTTCCCTTCAC 422
Query 400 AGGGGAGC-T-T-ATCATCCAACCAGACTTTTGATTCTCAGTCTGGTGCTAGAAACTCTA 456
|||||||| | | ||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 423 AGGGGAGCTTATCATCATCCAATCAGACTTTTGATTCTCAATCTGCTGCTAGAAACTCTA 482
Query 457 ATGCTCCTCCTGAGTTTGTTAATCAAGGTCTTCTTCTTTGGAATCAGACACGGGAGCGTT 516
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATGCTCCTCCTGAATATGTAAATCAAGGTCTTCTTCTTTGGAATCAGACACGGGAGCGTT 542
Query 517 GGGTAGGCAAGGAAAAACCCAACAACCCGGCGGATCGCAATCATGGAGCCAAGTTAAATT 576
|||| || ||||| |||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 543 GGGTGGGAAAGGATAAACCCAACAACCCGGTGGATCACAATCAAGGAGCCAAGTTAAATT 602
Query 577 GGAACACAGCAACGTATGATAGCTTGCTTGGGAGCAACAAGTTATTTCCCCAACCCATTC 636
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 603 GGAACACAGCAACGTATGATAGCTTGCTGGGGAGCAACAAGTTATTTCCCCAACCCATTC 662
Query 637 CTCTCACCGAAATGGTGGATTTTCTAGTGGACATATGGGAACAAGAAGGTCTATATGACT 696
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 663 CTCTCACCGAAATGGTGGATTTTCTAGTGGACATTTGGGAACAAGAAGGTCTATATGACT 722
Query 697 GATGAAACAAGACTTGGAAGATACACATACACACTGGTGCGGGCATTTCCGAttt-tttt 755
|| | |||||||||||||| ||||| ||| |||||| |||||||||| ||||| ||||
Sbjct 723 GA--A--CAAGACTTGGAAGACACACACACATACTGGTTCGGGCATTTCTGATTTATTTT 778
Query 756 --cttttcggttttgttttcgtttcTAAAAGCCCTTGTTGTTGTTACCACTTACCATCTT 813
|||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||
Sbjct 779 TTCTTTTCGGTTTTCTTTTCTTTTCTCAAAGCCCTTGTTGTT---ACCACTTATCATCTT 835
Query 814 TCATTTGGAGTTGATCGAGAATACTGGGAAATGTGGCTCATACGTTTTCACCGTAAATGA 873
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 CCATTTGGAGTTGATCGAGAATACTGGGAAATGTGGCTTATACGTTTTCACCGTAAATGA 895
Query 874 GAAATATCC 882
|||||||||
Sbjct 896 GAAATATCC 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5