BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471733
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15360.1 | Symbols: SHN1, WIN1 | Integrase-type DNA-binding ... 1245 0.0
AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superf... 75.0 1e-12
> AT1G15360.1 | Symbols: SHN1, WIN1 | Integrase-type DNA-binding
superfamily protein | chr1:5283538-5284673 FORWARD LENGTH=838
Length=838
Score = 1245 bits (674), Expect = 0.0
Identities = 790/843 (94%), Gaps = 20/843 (2%)
Strand=Plus/Plus
Query 1 TCCATCTTACATATATTACTCATCATCAAGTTCCTACTTTCTCTCTGACAAAAAACACAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 TCCATCTTACATATATTACTCATCATCAAGTTCCTACTTTCTCTCTGACAAACATCACAG 60
Query 61 AGTAAGTAAGAATGGTACAGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTAAGTAAGAATGGTACAGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTT 120
Query 121 CTTGGGTCGCTGAGATTCGTCATCCTCTCTTGAAGCGGAGGATTTGGCTAGGGACGTTCG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CTTGGGTCGCTGAGATTCGTCATCCTCTCTTGAAACGGAGGATTTGGCTAGGGACGTTCG 180
Query 181 AGACCGCTGAGGAGGCAGCAAGAGCTTACGATGAGGCCGCCGTTTTAATGAGCGGCCGCA 240
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 181 AGACCGCAGAGGAGGCAGCAAGAGCATACGACGAGGCCGCCGTTTTAATGAGCGGCCGCA 240
Query 241 ACGCCAAGACCAACTTTCCCTTCAACAACAACA-C-C-GGAGACACATCCGAGGGCAAAA 297
||||||| |||||||||||| |||||||||||| | | ||||| || |||||||||||||
Sbjct 241 ACGCCAAAACCAACTTTCCCCTCAACAACAACAACACCGGAGAAACTTCCGAGGGCAAAA 300
Query 298 CCGATATTTCATCTTCGTCCACAATATCATCCTCA---TCATCTTCATCGCTCTCTTCCA 354
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 301 CCGATATTTCAGCTTCGTCCACAATGTCATCCTCAACATCATCTTCATCGCTCTCTTCCA 360
Query 355 TCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCTCCATCCCTCACCTGCCTCC 414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCCCCATCCCTCACCTGCCTCC 420
Query 415 GTCTCGACACGGCCAGCTCCCACATCGGCGTCTGGCAGAAACGCGCCGGTTCCAAGTCTG 474
|||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 421 GTCTTGACACAGCCAGCTCCCATATCGGCGTCTGGCAGAAACGGGCCGGTTCAAAGTCTG 480
Query 475 ACTCCAGCTGGGTCATGACGGTGGAGCTCGGTGCCGCCAGCTCCTCCCAAGAGACTACTA 534
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 481 ACTCCAGCTGGGTCATGACGGTGGAGCTAGGTCCCGCAAGCTCCTCCCAAGAGACTACTA 540
Query 535 GTAAAGATTCACAAGACG--AT-CTTGCTCCGACCACTGAACTTGAGGTTGGTGGCAG-A 590
|||||| ||||||||||| || |||||||||||||||||| |||| |||||||||| |
Sbjct 541 GTAAAGCTTCACAAGACGCTATTCTTGCTCCGACCACTGAAGTTGAAATTGGTGGCAGCA 600
Query 591 GGAGAAGAAGGGAT-GGATGAGGAAGAGAAGGTTGCTTTGCAAATGATAGAGGAGCTTCT 649
| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 G-AGAAGAAGT-ATTGGATGAGGAAGAAAAGGTTGCTTTGCAAATGATAGAGGAGCTTCT 658
Query 650 CAATACAAACTAAACCTTATTTGCTTATATATATGTACCTATTTTTATTGCTGATTTACA 709
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 CAATACAAACTAAATCTTATTTGCTTATATATATGTACCTATTTTCATTGCTGATTTACA 718
Query 710 GCCATAATAATCAATTATACTGTCTATTTTAT-GCATCGTTTTTATATTTAAAAGGT-GT 767
|||| ||||||||||||||| || |||||||| | || ||||| ||||| ||||||| ||
Sbjct 719 GCCAAAATAATCAATTATACCGTGTATTTTATAG-AT-GTTTT-ATATT-AAAAGGTTGT 774
Query 768 TAGCTATATATTGTTTCTCTTATTTCCACATTTGTATCTAATAAAGTATTGATGTTTGTA 827
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 775 TAGCTATATATTGTTTCTCTT-TTTCCACATTTGTATCTAATAAAGTATTGGTGTTTGTA 833
Query 828 ACT 830
|||
Sbjct 834 ACT 836
> AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superfamily
protein | chr5:8820476-8821992 FORWARD LENGTH=982
Length=982
Score = 75.0 bits (40), Expect = 1e-12
Identities = 68/81 (84%), Gaps = 4/81 (5%)
Strand=Plus/Plus
Query 411 CTCCGTCTCGAC-ACGGCCAGCTCCCACATCGGCGTCTGGCAGAAACGCGCCGGTTCCAA 469
||||| |||||| || | |||||| ||||||||||||||||||||||||||||| || ||
Sbjct 480 CTCCGCCTCGACAAC-GACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAA 538
Query 470 GTCTGACTCCAG-CTGGGTCA 489
| || |||| ||||||||
Sbjct 539 AAC-GAGTCCAAACTGGGTCA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5