BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471734
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15370.1 | Symbols: | SNARE-like superfamily protein | chr1... 1094 0.0
> AT1G15370.1 | Symbols: | SNARE-like superfamily protein | chr1:5287047-5288577
FORWARD LENGTH=734
Length=734
Score = 1094 bits (592), Expect = 0.0
Identities = 652/680 (96%), Gaps = 7/680 (1%)
Strand=Plus/Plus
Query 35 AAGGAAGGAAGAAACTTGAGAGAGGAAGATCATGATCCTAGCCGTGTTGTTCGCCAATTC 94
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 AAGGAAGGAAGAAACTT--GAGAGGAAGATCATGATCCTAGCTGTGTTGTTCGCCAATTC 117
Query 95 CGTTGGGAATGTTTTGATCGAAAGGTTCAATGGAGTACCAGCTGAGGAACGGCTCCACTG 154
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTTGGGAATGTTTTAATCGAAAGGTTCAATGGAGTACCAGCTGAGGAACGGCTCCACTG 177
Query 155 GCGATCTTTCTTGGTCAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCT 214
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCGATCTTTCTTGGTTAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCT 237
Query 215 TCTCGTTGCTTGCCACAAGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCAT 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTCGTTGCTTGCCACAAGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCAT 297
Query 275 CTTCCTTGTTGGCAAAGACGAGTACGATGAGCTTGCTTTGGCAGAAACCATATATATCAT 334
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 298 CTTCCTTGTTGGCAAAGACGAGTATGATGAACTTGCTTTGGCAGAAACCATCTATATCAT 357
Query 335 AACAGCGGCTGTGAAAGACGTATGTGGAAAGCCGCCAACAGAGCGAGTGTTTTTGGATAA 394
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 AACAGCGGCTGTGAAAGACGTATGTGGAAAGCCGCCTACAGAGCGAGTGTTTTTGGATAA 417
Query 395 ATATGGACGGATTTGCTTGTGTCTTGATGAAATCGTTTGGAACGGACTTCTGGAGAACAC 454
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATATGGAAGGATTTGCTTGTGCCTTGATGAAATCGTTTGGAACGGACTTCTGGAGAACAC 477
Query 455 CGACAAAGACAGGATCAAGCGACTCATCAGATTGAAACCTCCTTCTGAAGTTTGATTTGC 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 CGACAAAGACAGGATCAAGCGACTCATCAGATTGAAACCTCCTTCTGAAGTTTGATATGC 537
Query 515 TCCAACCACACCACACATTCTTCTTTTACTCATTTTAAGACCTTTCTCATTCTCCACCGA 574
|||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 538 TCCAACCA-ACCACACATTCTTCTTCTACTCATTTTAAGAGCTTTCTCATTCTCCACCGA 596
Query 575 TTGTTGTTTGTTGAATCACTTCTCTCTATCAAATATTCAACTATCAACTACTGCTGTTGT 634
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 597 TTGTTGTTTGTTGAATCACTTCTCTATATCACATATTCAACTATCAACTACTGCTGTTGT 656
Query 635 TCGATCAGTCCATTTTGTAGTGT-GttttttttATCCTTCA-TTTTGTAGTGTCACATAA 692
||||||||||||| ||||||||| ||||||| ||| |||| |||| |||||| ||||||
Sbjct 657 TCGATCAGTCCATCTTGTAGTGTTGTTTTTTAAATC-TTCAGTTTT-TAGTGTTACATAA 714
Query 693 TAAAGAAAAAATTCCTATCC 712
|||||| ||||| ||||||
Sbjct 715 CAAAGAACAAATTTCTATCC 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5