BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471740

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15400.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   628    2e-179


> AT1G15400.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G80180.1); 
Has 84 Blast hits to 84 proteins in 17 species: Archae 
- 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses 
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:5295773-5296824 
REVERSE LENGTH=693
Length=693

 Score =  628 bits (340),  Expect = 2e-179
 Identities = 401/429 (93%), Gaps = 9/429 (2%)
 Strand=Plus/Plus

Query  89   ATGGAGGGTCTTCAAAGATCAACAATCTCTTTCCGCCGTCAAGGATCTTCCGGTATAGTC  148
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1    ATGGAGGGTCTTCAAAGATCAACAATCTCTTTCCGCCGTCAGGGATCTTCCGGTATAGTG  60

Query  149  TTTGACGATCGCCTCATCGCTGAGCTTAACAAAACGGGAGGCAACGAGCAGAAAGACGAC  208
            ||||||||||| |||||||| || || |||||| |||||  |||||||||||||||||| 
Sbjct  61   TTTGACGATCGTCTCATCGCCGAACTCAACAAATCGGGAAACAACGAGCAGAAAGACGAA  120

Query  209  AGTCAACGCGACGAACAACCTAAGCCTTTGTCGGAAAGCTCAGAACAGGTCAAACCAATC  268
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| 
Sbjct  121  AGTCAACGCGACGAACAACCTAAGCCTATGTCGGAAAGCTCTGAACAGGTCAAACCAAT-  179

Query  269  GCCGGCGGCGATGAGAAAGACAAGCTCAGACCGATTAAAACCGGTGGAGGAGCACCAGGA  328
                    |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  180  --------CGATGAGAAAGACAAGCTTAGACCGATTAAAACCGGTGGAGGAGCACCAGGA  231

Query  329  GGAATAGAGAGGAGTCGATCTAACGGCGGAGGAGCTCAACGACATCATAGAACAACTGGA  388
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  232  GGAATAGAGAGGAGTCGATCTAACGGTGGAGGAGCTCAACGACATCATAGAACAACCGGA  291

Query  389  AGAGTGTCTCCGGCAGTGGACCCGCCGTCTCCGAGAATTTCGTCATGCGGTTGCTGCTCT  448
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  292  AGAGTTTCTCCGGCAGTGGACCCGCCGTCTCCGAGAATTTCGTCATGCGGTTGTTGCTCT  351

Query  449  GCGTTTGGAAAGAATCCGCCGGGGAAGAAGGTTAATGCGAGGAAAAGGCCGCCGAAACGT  508
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  352  GCGTTTGGAAAGAATCCGCCGGGGAAGAAAGTTAATCCGAGGAAAAGGCCGCCGAAACGT  411

Query  509  AGATCGAGG  517
            |||||||||
Sbjct  412  AGATCGAGG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33054068726


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5