BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471743
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15420.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Small-sub... 1650 0.0
> AT1G15420.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Small-subunit
processome, Utp12 (InterPro:IPR007148); Has 764 Blast
hits to 656 proteins in 193 species: Archae - 0; Bacteria -
42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23;
Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301613-5303390
REVERSE LENGTH=1112
Length=1112
Score = 1650 bits (893), Expect = 0.0
Identities = 1021/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 1 TAGAAGAAGAAGAACCCTAACTAAACCCAACGTCGGCctctctttctctctctctctccg 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 15 TAGAAGAAGAAGAACCCTAACTAAACCCAACGCCGGCCTCTCTTTCTCTCTCTC-C-CCG 72
Query 61 cttctctcGCCGATCGCCGACCATGGCCAAGGACAAACTCAAGCCTCTTCTCTCCTCTGA 120
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTTCTCTCGTCGATCGCTGACCATGGCCAAGGACAAACTCAAGCCTCTTCTCTCCTCTGA 132
Query 121 TGCTGCAGGCGAAATCGCTGATACTCCTCCCCGagagaagaagcataagaagaagaacaa 180
||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 133 TGCTGCAGGTGATATCGCTGATACTCCTCTCCGAGAGAAGAAGCATAAGAAGAAGAGCAA 192
Query 181 gaagCGAGCTGAACCTGAACCCGATATACCCTCTACGCGTGATTTCGGTCTTGATGAAGA 240
||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||
Sbjct 193 GAAGCGAGCTGAACCTGAACCTGATATACCCTCTACACGAGATTCCGGTCTTGATGAAGA 252
Query 241 TAGAGATGGAGTGTTGGTAGATGATACTCTTAATGAGCCAACGATAGGTGATAAACTTGA 300
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 253 TAGAGATGGAGTATTGGTAGATGATACTCTAAATGAGCCAACGATAGGTGATAAACTTGA 312
Query 301 GAGTCTTGACTTATTAAATGGCGAAAAGGTTATCAGTGAGGAGAGTAATAGAGCTTCTGC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 313 GAGTCTTGACTTATTAAATGGCGAAAAGGTTAACAGTGAGGAGAGTAATAGAGATTCTGC 372
Query 361 TCCGGGCGATGATAAGCCTCCTACTGCAGCCTCTGTTAACGTTCTTCTGAGACAAGCATT 420
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 373 TCCTGGCGATGATAAGCCTCCTACTGCTGCTTCTGTTAACGTTCTTCTGAGACAAGCATT 432
Query 421 GCATGCTGACGATCGATCTCTTCTACTTGACTGCTTGTACAACCGAGATGAGCAGGTGAT 480
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 433 GCATGCCGATGATCGTTCTCTTCTACTCGACTGCTTGTACAACCGAGATGAGCAGGTGAT 492
Query 481 TGCTAATTCCGTCGCCAAGTTGAATTCAGCAGAAGTACTCAAGCTTCTAAATGCCCTTCT 540
||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 493 TGCTAATTCGGTTGCTAAGTTGAATTCAGCCGAAGTACTCAAGCTTCTAAATGCCCTTCT 552
Query 541 ACCAATACTACAATCAAGGGGGGCAATTTTGGCTTGTGCGATTCCGTGGATAAAGAGTCT 600
||||||||||||||||||||| || |||||||||||| | ||||| ||||||||||||||
Sbjct 553 ACCAATACTACAATCAAGGGGTGCTATTTTGGCTTGTACAATTCCATGGATAAAGAGTCT 612
Query 601 GTTACTTACTCATTCTAGTGGAATTATGTCTCAAGAATCATCGTTGCTTGCACTAAACAC 660
|||||||||||||||||||||||||||||| ||||| ||||| || || || |||||||
Sbjct 613 GTTACTTACTCATTCTAGTGGAATTATGTCCCAAGAGTCATCATTACTCGCTTTAAACAC 672
Query 661 CATGTATCAGCTCATCGAATCACGGGTTTCAACTATTCATACTGCCGTAGAGGTCTCAAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 673 CATGTATCAGCTCATCGAATCACGGGTTTCAACTATTCATACTGCCGTAGAGGTTTCAAG 732
Query 721 TGGCTTGGACTTGATTGTGGACGACTTAGATGAAGAAGAAGATGAAGGTCCCGTGATCTA 780
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 733 TGGCTTGGACTTGATTGTGGACGACTTGGATGAAGAAGAAGATGAAGGTCCCGTGATCTA 792
Query 781 TGAGGACAAGGACAGTGATGAAGAAGAAGGAGAAGGAATAGAGGAAGCAATGGAGACAGA 840
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 793 TGAGGACAAGGACAGTGATGAAGACGAAGAAGAAGGAATAGAGGAAGCAATGGAGACAGA 852
Query 841 TGAAGAGGCAGACGACTCAGCGGATGAAGCAGCTGATGGTGTGAATGATTTTGAAGGATT 900
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 853 TGAAGAGGCAGACGACTCAGCAGATGAAGCTGCTGATGGTGTGAATGATTTTGAAGGATT 912
Query 901 TGACGACATGAGCGATTGATAAAGCTCCTGAAAAAGGCAAAAGTTTTGATTTGTGTGAGG 960
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 913 TGACGACATGAGTGATTGATAAAGCTCCTGAAAATGGCAAAAGTTTTGATTTGTGTGAGG 972
Query 961 CTGATTGATTGTTTAGTTGTTAAGAATATGGCTAAAAGGTACAATCTTTCGTCAAGAAGT 1020
||||| | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 973 CTGAT-G-TT----AGATGTTAAGAATATGGCTAAAAGGTTCAATCTTTCGTCAAGAAGT 1026
Query 1021 CTGTAATACGTAATGGTTATATCGATATGGACGAGACTTTGTACGCAGGAAGAATTAGTT 1080
||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||| ||
Sbjct 1027 CTGTAATACGTAATGGTTATATCGATATGAACGAGACTTTGTGCTAAGGAAGAGTTAATT 1086
Query 1081 TTT 1083
|||
Sbjct 1087 TTT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5