BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471744
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15430.1 | Symbols: | Protein of unknown function (DUF1644)... 1441 0.0
> AT1G15430.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:5304317-5306012 FORWARD LENGTH=1136
Length=1136
Score = 1441 bits (780), Expect = 0.0
Identities = 939/1013 (93%), Gaps = 21/1013 (2%)
Strand=Plus/Plus
Query 29 CATCTTCACCGTTTCATACGAAACTCTTTACGAGGAGCGAAC-CTTT--Ttctctctctc 85
||||||||||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 21 CATCTTCACCGTTTCATACGAAACTCTTTACGAGGAG-TCTCTCTTTACTTTTCTCTCTC 79
Query 86 tctc--tcAAAGAAAG-AAAGCCTCTTTTCA-TTTCTCCGGCCAGAGTGTGTGATATGCA 141
|||| |||||||| |||||||||||| | ||||||||||||||||||||| |||||
Sbjct 80 TCTCAAAGAAAGAAAGAAAAGCCTCTTTTAATTTTCTCCGGCCAGAGTGTGTGGGATGCA 139
Query 142 CAAGGAAAGACGGATAATGCCGGTTTCAAGCAACAGAAATAGGGTTTCGCCTTATCCGCT 201
|||||||||| ||| |||||||||||| |||||||||||||| || ||||| || |||||
Sbjct 140 CAAGGAAAGAGGGAAAATGCCGGTTTCTAGCAACAGAAATAGAGTATCGCCATACCCGCT 199
Query 202 TCGCTCTTGTAGGAACAAGAAACAAAAAGAAGTCGAGGCG--G-CCTCACCTGTTGAGTT 258
||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 200 TCGCTCTTGCAGGAACAAGAAACAAAAAGAAGTCGAGGCGTCGTCGTCACCTGTTGAGTT 259
Query 259 AGAGAGTGTGAGTGAATGGGAGGATGTGAGGTGTGTGATCTGTATGGAGCCTCCTCACAA 318
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 260 AGAGAGTGTTAGTGAATGGGAGGATGTGAGGTGTGTGATTTGTATGGAGCCTCCTCACAA 319
Query 319 TGCTGTCCTCTTGCAATGCTCTTCTTTCTCCAAAGGATGTCGTGCTTACATGTGTGACAC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 320 TGCTGTCCTCTTGCAATGCTCTTCTTTCTCCAAAGGATGTCGTGCTTACATGTGTGATAC 379
Query 379 AAGCGCCCGTCACTCCAACTGCTTCAAGCAGTACCGCAGAAACAACAGCTCAAGCCGTTG 438
|||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 380 AAGCGCTCGTCACTCCAATTGTTTCAAGCAGTACCGCAGAAGCAACAGCTCAAGCCGTTG 439
Query 439 CAGCGGCAAGACTCTAAACTGTCCCTACTGCAGAGGAGAGGTTCAGGGGACAATGAAGTC 498
|| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 440 TAGTGGCAAGACTCTACATTGTCCCTACTGCAGAGGAGAGGTTCAGGGGACTATGAAGTC 499
Query 499 GACTTGTGCTCGGAGATTCATGAATGCTAGACCGAGGTCTTGTTCTGTGGACAAGTGTGA 558
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||
Sbjct 500 GACTTGTGCTCGGAGATTCATGAATGCTAGACCGAGGTGTTGTACTGTTGACAAGTGCGA 559
Query 559 TTTCTCAGGGACCTATGCTCAGCTGAAAAATCACTTGAAAACTGAGCATCCTGGTTTTAC 618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TTTCTCAGGGACCTATGCGCAGCTGAAAAATCACTTGAAAACTGAGCATCCTGGTTTTAC 619
Query 619 ACCTCCAAAGTTAGACCCTTGGGAGCAACACATGTGGGAGCAATTGGAGAGAGAGGCCGA 678
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 620 ACCGCCAAAGTTAGACCCTTGGGAGCAACACATGTGGGAGCAGTTGGAGAGAGAGGCGGA 679
Query 679 ATACATTGAAATGCTCAATGCTCGACAGAGATGGGATGCAGAACAGAGATTGTTGGCGAC 738
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 680 GTACATTGAAATGCTCAACGCTCGTCAGAGATGGGATGCAGAACAGAGATTGTTGGCGAC 739
Query 739 TTCTCTCCATCAGCTTCCATATCGCCATCCCATGATTGATCTCAACTTTGATGCGTTCAT 798
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 740 TTCTCTCCATCAGCTTCCATATCGTCATCCCATGATTGATCTCAACTTTGATGCGTTGGT 799
Query 799 CCATAATCTGTTTCTTGGTGCA---A-GGAG--CCAAGCAAGCACCGACAATTACCCGGC 852
|||||||||||||||||||| | |||| || |||||||||||||||||||||||
Sbjct 800 GCATAATCTGTTTCTTGGTGCGTCCATGGAGAGCCGTGCAAGCACCGACAATTACCCGGC 859
Query 853 TCACATACCCCGTCTGGAGTTCCATTCGCCGC-TGTATCCCAGATGGACGCCATGAAGAT 911
||||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 860 TCACATACCCCGTCTGGAGTTCCATGCCCC-CATGTATCCCAGATGGACGCCATGAAGAT 918
Query 912 TCTGAATGCC-GAGTCTATGAGGAATTCGTCCAAA-GTTTTGATGTCTCTTGATTTTTAT 969
||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 919 TCTGAGTGCCAGAGTCTATGAGGAATTCTTCCAAAAGTTTTGATGTCTCTTGATTTTTAT 978
Query 970 CATAATGTAATGTTCTTATAGCGACATCAGTTCTTGTTCTAGGCATAAATTTA 1022
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 979 CATAATGTAATGTTCTTGTAGCGACATCAGTTCTTGTTCTAGGCATAAATTTA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5