BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471748
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15470.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2122 0.0
> AT1G15470.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:5315507-5317863 FORWARD LENGTH=1416
Length=1416
Score = 2122 bits (1149), Expect = 0.0
Identities = 1323/1402 (94%), Gaps = 31/1402 (2%)
Strand=Plus/Plus
Query 1 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAG-------A--AAA--G 49
|||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 4 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAGATAACAAACCAAACTA 63
Query 50 aaaaaaaaaaGTGTCTCCTTTTATCATTCCCTCTTTTCTCTT-TAATAGGTGTGATCCTC 108
|||||||||||| ||||||||||||||||| ||| ||| ||| | |||||||||||||||
Sbjct 64 AAAAAAAAAAGTTTCTCCTTTTATCATTCCTTCTCTTCCCTTGT-ATAGGTGTGATCCTC 122
Query 109 TTCAAGGGGATTTCTCTGGCTGGTCATACATTCGCACCGATCAAACTCGGATTGGTCTTT 168
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 123 TTCAAGGGGATTTCTCTGGCGGGTCATACATTCGCACCGATCAAAGTCGGATTGGTCTTT 182
Query 169 CTTAACGCAATCCTGTCGCGATTCAAAAACGA-TTCTGGGTTTGTTAGTGAATAGACGAG 227
|||||||||||| || | ||||||||||| | ||||||||||||||||||||||| ||
Sbjct 183 CTTAACGCAATCTTGACCCGATTCAAAAA--ATTTCTGGGTTTGTTAGTGAATAGATAAG 240
Query 228 aaaaaaaGATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 287
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGATAA-ATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 299
Query 288 CTTATAGTCCGGTGACTCCAGATGGGTTCTTCCTCATTAGCGCCAGCAAAGATTCGAATC 347
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 CTTATAGTCCGGTGACTCCAGATGGGTTCTTTCTCATTAGCGCCAGCAAAGATTCGAATC 359
Query 348 CGATGTTGAGGAATGGGGAGACTGGTGACTGGATTGGAACTTTTGAAGGACATAAGGGAG 407
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 CGATGTTGAGGAATGGAGAGACTGGTGACTGGATTGGGACTTTTGAAGGACATAAGGGAG 419
Query 408 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCAGATT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCTGATT 479
Query 468 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 539
Query 528 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGCTTACTCACTGGTGGAATGG 587
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGTTTACTCACTGGTGGAATGG 599
Query 588 AGAAAATTCTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGAA 647
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 AGAAAATACTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGGA 659
Query 648 ATTCCGCTGGTTCAATTAGAACCGTTGAATGGCTTCATAGTGATAATACAATCTTAAGCT 707
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 660 ATTCCCCTGGTTCAATTAGAACTGTCGAATGGCTTCATAGTGATAATACAATCTTAAGCT 719
Query 708 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 779
Query 768 CATTAGAAACAAAATCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 827
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATTAGAAACAAAGTCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 839
Query 828 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 899
Query 888 GCTATGACATGCCTTGCAATGTTGAATCGGCATCTTTGGAACCGAAACACGGCAACACTT 947
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 900 GCTATGACATGCCTTGCAATGTTGAATCGGCATCGTTGGAACCGAAACACGGTAACACTT 959
Query 948 TCATTGCTGGAGGAGAAGATATGTGGGTGCATAGGTTTGATTTCCAGACTGGAGAGGAGA 1007
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 960 TCATTGCTGGAGGAGAAGATATGTGGGTGCACAGGTTTGATTTCCAGACTGGAGAAGAGA 1019
Query 1008 TTGGGTGTAACAAGGGTCACCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1067
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTGGGTGTAACAAGGGTCATCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1079
Query 1068 AATCATACACATCAGGCTCAGAAGACGGAACAGTCAGAATATGGGTGGTGGGTTCAGTGA 1127
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1080 AGTCATACACCTCAGGCTCAGAAGACGGAACGGTCAGAATATGGGTGGTGGGTTCGGTAA 1139
Query 1128 ACCATCAC-GAGGAGAGCAATCCGAGCGGTCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1186
|||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1140 ACCATC-CTGAGGAGAGCAATCTAAGCGGCCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1198
Query 1187 CGTAAAGCGGAAAGTCTGCGTATCAATGAGAAAGCTGCAGAAGCTAAATGAAACATCATC 1246
|||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1199 CGTAAAGCTGAAAGTCTCCGTATCAGTGAGAAAGCCGCAGAAGCTAAATGAAACACCATC 1258
Query 1247 GTTAGCTTATGATATGGCATAGATTCATAGTTTGtttttttGCATCATTATAAGATGTGA 1306
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1259 GTTAGCTTATGATATCACATAGATTCATAGTT-GTTTTT--GCATCATTATAAGATGTGA 1315
Query 1307 CAGAGGG-TTTTGCCTTTTAAAAGTCTCTCAAGACGGAATAAAACGAACATAAATAATAT 1365
|| |||| ||||||||||||||||||||||| ||| |||||||||||| |||| |
Sbjct 1316 CAAAGGGGTTTTGCCTTTTAAAAGTCTCTCA-GACCGAATAAAACGAA-ATAA-T----- 1367
Query 1366 CTTCAACTATATTTGAGTGAAT 1387
||||||||||| ||||||||||
Sbjct 1368 CTTCAACTATACTTGAGTGAAT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5