BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471749
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3070 0.0
> AT1G15480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5318011-5320594 FORWARD LENGTH=2081
Length=2081
Score = 3070 bits (1662), Expect = 0.0
Identities = 1924/2051 (94%), Gaps = 16/2051 (1%)
Strand=Plus/Plus
Query 1 CCTAAACCCTTCCTTTTAGCTCTCTGCTCTCCTGGTTTTTAGCTTTCCTCCATTTCGTGC 60
||||||||||| ||| |||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1 CCTAAACCCTTAATTTGAGCTCTCTGCTCTCCTGG-TTTTAGTTTTCCTCTATTTCGTGC 59
Query 61 TCAATTCACTTG-TCTCCAG-TCTCAAGCAGATCAGTG-C--CGGAGATCTTGTCCGAGT 115
||||||| |||| ||||||| || || | ||||||| | ||| ||| |||||||||
Sbjct 60 TCAATTCGCTTGTTCTCCAGTTC-CACTC-TATCAGTGCCGGCGGCGATATTGTCCGAGG 117
Query 116 AGAAGACATGTTTGCTCTTTCCAAGGTTTTACGGAGAAGTCAGAGTCTCCGACTAGGAGC 175
| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 118 ATAAAACATGTTTGCTCTTTCCAAGGTTTTGCGGAGAAGTCAGAGTCTCCGCCTAGGAGC 177
Query 176 TTGCAATGCTGTCTACTCTAAGCTAGATATACCGTTGGAAGAAAGAAACAGTGCTATTGA 235
||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 178 TTGCAATGCTGTCTACTCTAAGCTAGATATACCATTGGGAGAAAGAAACATTGCTATTGA 237
Query 236 ATCGAACGCTTTGATTCATGATAAACACGATGGTTTCCCTAGATTTTACGAGCTCTCTTG 295
||| |||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||
Sbjct 238 ATCAAACGCTTTGATTCATGATAAACACGAAGCTTTGCCTAGATTTTATGAGCTCTCTTG 297
Query 296 GTCTTCCTCTACCGGAAGACGCTCACTTTCCTCTGACGCTGGAGCTAAAACAACCGGAGA 355
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 298 GTCTTCCTCTACCGGAAGACGTTCACTTTCCTCGGACGCTGGAGCTAAAACTACCGGAGA 357
Query 356 TGAAGATGACCTCGAAGACAAGAATTTAGACATTGCTACTCCAAACGAGACTAGTAGTAA 415
||| ||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| |
Sbjct 358 TGACGATGACCTCGAAGACAAGAATGTAGACCTTGCAACTCCAGACGAGACTAGTAGTGA 417
Query 416 TAGTGAAGATGAG-GAGGAGTTTTCCGGTGATGAAGGTGCCATTGAAGGAGCAGAACTGG 474
||||||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 418 TAGTGAAGATG-GTGAGGAGTTTTCCGGTGATGAAGGGGATATTGAAGGAGCAGAGCTGG 476
Query 475 AACTACATGTCCCGGCAAA-CAAAAGATCATCGGAGCTGTTTAAGGCCATTGTTTCTGTC 533
||||||||||||||| ||| ||| ||| |||||||| |||||||||||||||||||||||
Sbjct 477 AACTACATGTCCCGG-AAAGCAAGAGACCATCGGAGATGTTTAAGGCCATTGTTTCTGTC 535
Query 534 TCAGGTCTGTCTGTAGGGACTGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAGC 593
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 536 TCAGGTCTGTCTGTAGGGAGTGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAAC 595
Query 594 CGTACAGAGTTTGCAAGTGCGATGCTGCAACTCCGTATACGTCGGATGTATGGGAGAGCA 653
|||| |||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 596 CGTAAAGAGTTTGAAAGTGCGATGCTACAACTCCGTAAACGTCGGATGTTTGGGAGAGCA 655
Query 654 TTGCAGATGACAGAATGGTTGGACGATAATAAGCAGTTTGAACTGGAAGAGGGAGATTAT 713
|||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||||
Sbjct 656 TTGCAGATGACAGAATGGTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTAT 715
Query 714 GCTTCTCGGCTTGATCTGATTTCCAAGGTACGTGGCTTGTACAAGGGAGAAGCTTATATC 773
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 GCTTGTCGGCTTGATCTGATTTCCAAGGTACGTGGCTGGTACAAGGGAGAAGCTTATATC 775
Query 774 GAAACAATCCCGGAATCTTTCAGAGGGGAATTGGTCTACAGAACCCTCCTGTCGAATTAT 833
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 776 AAAACAATCCCGGAATCTTTCAGAGGGGAATTGGTCTACCGAACCCTCCTGGCGAATCAT 835
Query 834 GTGGCAACTAGCAATGTGAGGACAGCAGAAGCAGTTTTCAACAAAATGAAGGACTTGGGA 893
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 836 GTGGCAACTAGCAATGTGAGAACAGCTGAAGCAGTTTTCAACAAAATGAAGGACTTGGGA 895
Query 894 TTCCCTTTGTCAACATTTACCTGTAATCAGATGCTTATTCTTTACAAGAGGGTCGACAAG 953
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 TTCCCTCTGTCAACATTCACCTGTAATCAGATGCTTATTCTTTACAAAAGGGTCGACAAG 955
Query 954 AAGAAAATAGCCGATGTGTTATTGCTGATGGAGAAGGAAAATCTGAAGCCAAATCTTAAC 1013
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 956 AAGAAAATAGCCGATGTGTTATTGCTGTTGGAGAAGGAAAATCTGAAGCCGAATCTTAAC 1015
Query 1014 ACATACAAAATCCTGATTGATACCAAAGGATTATTAAATGACATAACTGGGATGGAACAA 1073
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1016 ACATACAAAATCCTGATTGATACCAAAGGATCATCAAATGACATAACTGGGATGGAACAA 1075
Query 1074 ATTGTGGAGACAATGAAAAGTGAAGGTGTTGAGCCTGACCTTCGTGCACGAGCTCTCATT 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 ATTGTGGAGACAATGAAAAGTGAAGGTGTTGAGCTTGACCTTCGTGCACGAGCTCTCATT 1135
Query 1134 GCGAGAAACTATGCATCAGCTGGGCTTAAAGAGAAGGCTCAAAAAGTGCTGAAAGAGATG 1193
|| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1136 GCAAGACACTATGCATCAGCTGGGCTTAAAGAGAAGGCTGAGAAAGTGCTGAAAGAGATG 1195
Query 1194 GAAGGTGAAAGCTTGGAGGAAAATCGGCATGTGTGCAAGGATTTGCTTTCCGTGTATGGC 1253
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1196 GAAGGTGAAAGCTTGGAGGAAAATCGGCATATGTGCAAGGATTTGCTTTCCGTCTATGGC 1255
Query 1254 TTTCTCCAGAGGGCGGATGAAGTGAC-CAGAATTTGGAAGATCTGTGAAGAAAAACCCCG 1312
| ||||||||||| |||||||||| | |||| |||||||||||||||||||||| |||||
Sbjct 1256 TATCTCCAGAGGGAGGATGAAGTG-CGCAGAGTTTGGAAGATCTGTGAAGAAAACCCCCG 1314
Query 1313 TTATAAAGA-GTCCCTTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGTCAAAGAAG 1371
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1315 TTATAACGAGGT-CCTTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGTCAAAGATG 1373
Query 1372 CAGAGGCAGTTTTTGAGAAGATGTTGCAGATGTCCCGTAGAGTTTCTTCTAATGTTTACT 1431
||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1374 CAGAGGCGGTTTTTGAGAAGGTGTTGAAGATGTCCCATAGAGTTTCTTCTAATGTTTACT 1433
Query 1432 CCGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CCGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTA 1493
Query 1492 AGCAGATGTCGGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAGC 1551
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGCAGATGTCAGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAGC 1553
Query 1552 TCTATGTGGAAGCTGGGGAAGTAGAAAAGGCTGAGTCTTCACTGAGCAAGGCAATACAGT 1611
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TCTATGTGGAAGCCGGGGAAGTAGAAAAGGCTGAGTCTTCACTGAGCAAGGCAATACAGT 1613
Query 1612 CGAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACGTAATGGGCGAGTATGTGAGAA 1671
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1614 CGAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACTTAATGCACGAGTATGTGAGAA 1673
Query 1672 GGGGTGATGTTCACAACACAGAGAAAATCTTCCAGAGGATGAAGCAAGCTGGCTATCAAT 1731
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GGGGTGATGTTCATAACACAGAGAAAATCTTCCAGAGGATGAAGCAAGCTGGCTATCAAT 1733
Query 1732 CTCGCTTAAGGACGTACCAAGCCCTTATCCAAGCTTATGTCAATGCCAAAGCTCCAGCTT 1791
||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CTCGCTTCTGGGCGTACCAAACCCTTATCCAAGCTTATGTCAATGCCAAAGCTCCAGCTT 1793
Query 1792 ATGGAATGAAGGATAGAATGAAAGCTGATAACATCTTCCCCAACAAAGGATTAGCTGCTC 1851
||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1794 ATGGAATGAAGGAAAGAATGAAAGCTGATAACATCTTCCCAAATAAAAGATTAGCTGCTC 1853
Query 1852 AGCTCATTAAAACCGATCCCTTCAAGAAGACCCCTCTCTCCGATCTCCTTGATTGAGTTG 1911
| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1854 AACTCGCTAAAGCCGATCCCTTCAAGAAGACCCCTCTCTCGGATCTCCTTGATTGAGTTG 1913
Query 1912 AACTGCAGCTACAACATCATCCGCCTTGTGAATCTTTGGTTTGATTGATCAACCTTTTAT 1971
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 CGTTACAGCTACAACATCATCCGCCTTGTGAATCTTTGGTTTGATTGATCAACCTTTTAT 1973
Query 1972 CCATGTTGGTAGAAACTTCAGTAGCTTAGTTTAAATAAGTCCTCATGATATATAAACTCT 2031
||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||
Sbjct 1974 CCATGTTGGTAGAAACTTCAGTAGCTTAGTTTAAAAAAGACCTCCTGATATATAAATTCT 2033
Query 2032 GTTTGGTTGCT 2042
|||||||||||
Sbjct 2034 GTTTGGTTGCT 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5