BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471756
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15550.1 | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-ox... 1857 0.0
> AT1G15550.1 | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase
1 | chr1:5344478-5346166 REVERSE LENGTH=1256
Length=1256
Score = 1857 bits (1005), Expect = 0.0
Identities = 1169/1247 (94%), Gaps = 15/1247 (1%)
Strand=Plus/Plus
Query 1 ATCACCAAACATCACACTTCTCATAAG-AAAAATACACAAACATCTATCAGATTTATAAA 59
||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| |||
Sbjct 1 ATCACCAAACACCACACTTCTCATAAGAAAAAAAACACAAACATCTATCAAATTTACAAA 60
Query 60 -TTTTTAAA--AA--CAAGATCAGCAAGATGCCTGCAATGTTAACAGATGTGTTTAGAGG 114
|||| ||| || || | |||||||||||||| |||||||||||||||||||||||
Sbjct 61 GTTTTAAAACTAATTAAAAAAGAGCAAGATGCCTGCTATGTTAACAGATGTGTTTAGAGG 120
Query 115 GCATCCCATTCACCTCCCACACTCTCACCA-ACCTGACTTCACTTCCCTTCGTGAGCTCC 173
|||||||||||||||||||||||||| || |||||||||||| || || || |||||||
Sbjct 121 CCATCCCATTCACCTCCCACACTCTCA-CATACCTGACTTCACATCTCTCCGGGAGCTCC 179
Query 174 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCGCCGCTGCTCCTTCTCCTC 233
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCTCCGCTGCTCCTTCTCCTC 239
Query 234 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTGGACCACCCGGACGCGGCCAACCAAA 293
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 240 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTCGACCACCCGGACGCGACTAACCAAA 299
Query 294 TCGGCCATGCATGTAGAACTTGGGGTGCCTTCCAGATCGCAAACCACGGCGTGCCTTTGG 353
|||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 300 TCGGTCATGCATGTAGAACTTGGGGTGCCTTCCAAATCTCAAACCACGGCGTGCCTTTGG 359
Query 354 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGCCTCTTCGGGCTACCTGTCCAACGCA 413
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGTCTCTTCGGGCTACCTGTCCAACGCA 419
Query 414 AGCTTAAGGCGGCTCGGTCGGAGACAGGTGTCTCCGGTTATGGCGTCGCTCGTATCGCGT 473
|||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 420 AGCTTAAGTCTGCTCGGTCGGAGACAGGTGTGTCCGGCTACGGCGTCGCTCGTATCGCAT 479
Query 474 CTTTCTTCAATAAGAAAATGTGGTCCGAAGGTTTCACCATCACTGGTTCCCCTCTCAACG 533
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 480 CTTTCTTCAATAAGCAAATGTGGTCCGAAGGTTTCACCATCACTGGCTCGCCTCTCAACG 539
Query 534 ATTTCCGTAAACTTTGGCCCCAACTTCACCTCAACTACTGCGACATCGTTGAAGAGTACG 593
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 540 ATTTCCGTAAACTTTGGCCCCAACATCACCTCAACTACTGCGATATCGTTGAAGAGTACG 599
Query 594 AGGAACAAATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAAATCACTTGGGG 653
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 AGGAACATATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAATTCACTTGGGG 659
Query 654 TCAGCGAAGAGGACGTTGAATGGGCCAGTCTCAATTCAGATTTAAATTGGGCCCAAGCTG 713
|||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 660 TCAGCGAAGAAGACATTGAATGGGCCAGTCTCAGTTCAGATTTAAACTGGGCCCAAGCTG 719
Query 714 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCTATGGGTCTAGCAG 773
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCCATGGGTCTAGCAG 779
Query 774 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGCCTACAAG 833
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGTCTACAAG 839
Query 834 TGTTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGGTTCCTGGCTCGCTAGTGGTCA 893
| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 840 TATTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGTTTCCTGGCTCGCTCGTGGTTA 899
Query 894 ACGTTGGTGACCTCTTCCACATCTTATCCAACGGATTGTTTAAAAGCGTGCTGCACCGCG 953
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 900 ACGTTGGTGACCTCTTCCACATCCTATCCAATGGATTGTTTAAAAGCGTGTTGCACCGCG 959
Query 954 CTAGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCACAATCTG 1013
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 CTCGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCGCAATCTG 1019
Query 1014 ATATCAAGATATCACCCGTACCGAAGCTGGTTAGTCCGGTTGAATTGCCTCTATACCAAT 1073
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1020 ATATCAAGATATCACCTGTACCGAAGCTGGTTAGTCCCGTTGAATCGCCTCTATACCAAT 1079
Query 1074 CGGTCACATGGACAGAGTATCTTCGAACAAAAGCAACTCACTTCAATAAAGCTCTTTCAA 1133
|||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 CGGTGACATGGAAAGAGTATCTTCGAACAAAAGCAACTCACTTCAACAAAGCTCTTTCAA 1139
Query 1134 TGATTAGAAATCACAGAGAGGAATGATTAATCATGAGATAATAATATTTGTGATCCGCTA 1193
||||||||||||||||||| ||||||||| || |||||||| |||||||| |||
Sbjct 1140 TGATTAGAAATCACAGAGAAGAATGATTA-----GA--TAATAATAGTTGTGATCTACTA 1192
Query 1194 GTTAGTTTGATTAATAAATTGTTGTTAATTATTTCAGCAATATGATT 1240
||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1193 GTTAGTTTGATTAATAAATTGTTGTAAATGATTTCAGCAATATGATT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5