BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471757
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-536... 2848 0.0
AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30... 839 0.0
> AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-5365549
FORWARD LENGTH=1886
Length=1886
Score = 2848 bits (1542), Expect = 0.0
Identities = 1759/1861 (95%), Gaps = 25/1861 (1%)
Strand=Plus/Plus
Query 1 GTGTGTCCTTCACTTTCAAAGACAGTCTCTTTCCCCAAAGAGCGGATTCAGGATTCACCA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTCTCCTTCACTTTCAAAGACAGTCTCTTTCCCCAAAGAGCGGATTCAGGATTCACCA 60
Query 61 TCTCGATCTGTGTCCAAAGCTCCCATCTTTCTTC--T-TTCCCTGAAGAATTTACTGGAG 117
||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||
Sbjct 61 TCTCGATCTGTGTCCAAAGCTCCTATCTTTCTTCTTTCTTCCCTGAAGAATTTTCTGGAG 120
Query 118 CTTCACAGGTCAGATGAAGATTATGCAATCCTAAGACTCTAAGACGTT-TTCGGGGCTGT 176
|||| ||| ||||| |||||| ||||||||||||||||||||||| || ||| ||||||
Sbjct 121 CTTCTCAGATCAGAGGAAGATGATGCAATCCTAAGACTCTAAGAC-TTCTTCAAGGCTGT 179
Query 177 GTTTTCTCGTGGGA-TTTTAAACATGGGGAAGGAAAATGCTGTGTCTCGGCCATTCACTC 235
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTTATCGTGGGATTTTTAAACATGGGGAAGGAAAATGCTGTGTCTCGGCCATTCACTC 239
Query 236 GTTCCCTTGCCTCTGCTTTGCGCGCTTCAGAAGTGACTTCTACCACACAGAATCAACAGA 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GTTCCCTTGCCTCTGCTTTGCGCGCTTCAGAAGTGACTTCTACTACACAGAATCAACAGA 299
Query 296 GAGTAAACACAAAAAGACCAGCCTTGGAGGATACAAGAGCCACTGGACCGAACAAGAGGA 355
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GAGTAAACACAAAAAGACCAGCCTTGGAGGATACAAGAGCCACTGGACCCAACAAGAGGA 359
Query 356 AGAAGCGAGCGGTTCTAGGGGAGATCACAAATGTTAACTCCAATGCATCAGCTATACTTG 415
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 360 AGAAGCGAGCGGTTCTAGGGGAGATCACAAATGTTAACTCCAAT--A-CAGCTATACTTG 416
Query 416 AGGCCAAAAACATCAAGCAGATAAAGAAAGGACGGGGACAGGGATTGGCGAGTACATCCC 475
|||||||||||| ||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 417 AGGCCAAAAACAGCAAGCAGATAAAGAAAGGACGCGGTCATGGATTGGCGAGTACATCCC 476
Query 476 AGTTGGCATCTTCTGTTACTTCAGAAGTCACAGATCTTCAGTCCAGGACTGATGCAAAAG 535
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 AGTTGGCAACTTCTGTTACTTCAGAAGTCACAGATCTTCAGTCCAGGACCGATGCAAAAG 536
Query 536 TAGAAGTTGTATCAAATACAGCAGGAAACCTGTCTGTTTGTAAAGGCAC--A-AATGCAG 592
| ||||||| ||||||||||||||||||||| ||||||| ||||||||| | || |||
Sbjct 537 TTGAAGTTGCATCAAATACAGCAGGAAACCTTTCTGTTTCTAAAGGCACAGATAACACAG 596
Query 593 CTGATAACTGTATTGAGAAATGGAATTTC-AGATTGCCTCCAAGACCTCTTGGGAGATCA 651
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 597 CTGATAACTGTATTGAGATATGGAA-TTCTAGATTGCCTCCAAGACCTCTTGGGAGATCA 655
Query 652 GCTTCTACAGCTGAGAAAAGTGCTGTTATTGGTAGTTCAACTGTACCGGATATCCCGAAA 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 GCTTCTACAGCTGAGAAAAGTGCTGTTATTGGTAGTTCAACTGTACCGGATATCCCAAAA 715
Query 712 TTCGTAGACATTGATTCAGATGACAAGGATCCTCTACTGTGCTGCCTCTATGCCCCTGAA 771
|| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 716 TTTGTAGACATCGATTCAGATGACAAGGATCCTTTACTGTGCTGCCTCTATGCCCCTGAA 775
Query 772 ATCTACTACAATTTGCGTGTTTCGGAGTTTAAACGCAGACCAGTTCCCGACTTTATGGAG 831
||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||
Sbjct 776 ATCCACTACAATTTGCGTGTTTCAGAGCTTAAACGCAGACCACTTCCGGACTTTATGGAG 835
Query 832 AGAATACAGAAGGATGTCACCCAGTCCATGCGGGGGATTCTGGTTGATTGGCTTGTAGAG 891
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 836 AGAATACAGAAGGATGTCACCCAGTCCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAG 895
Query 892 GTCTCTGAAGAATACACACTTGCATCTGACACCCTCTACCTCACAGTGTATCTCATAGAC 951
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 GTCTCTGAAGAATACACACTTGCATCTGACACTCTCTACCTCACAGTGTATCTCATAGAC 955
Query 952 TGGTTCCTCCATGGAAACTACGTGCAAAGACAGCAACTTCAACTGCTCGGCATCACTTGC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGTTCCTCCATGGAAACTACGTGCAAAGACAGCAACTTCAACTGCTCGGCATCACTTGC 1015
Query 1012 ATGCTAATTGCCTCGAAATATGAGGAAATCTGTGCGCCACGCATTGAGGAGTTTTGCTTC 1071
||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1016 ATGCTAATTGCCTCGAAGTATGAGGAAATCTCTGCTCCACGCATTGAGGAGTTTTGCTTC 1075
Query 1072 ATTACGGATAACACCTACACAAGAGATCAGGTCTTGGAAATGGAGAACCAAGTACTTCAG 1131
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1076 ATTACGGATAACACCTACACAAGAGATCAGGTCCTGGAAATGGAGAACCAAGTACTTAAG 1135
Query 1132 CATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTCAGGAGATTTCTTAGA 1191
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1136 CATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTTAGGAGATTTCTCAGA 1195
Query 1192 GCAGCACACGCCTCTCACCTGAGCCCGAGCCTTGAAGTCGAGTTTCTAGCCAGCTATCTA 1251
||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 GCAGCTCAAGCCTCTCGCCTGAGCCCAAGCCTTGAAGTCGAGTTTCTAGCCAGCTATCTA 1255
Query 1252 ACAGAGTTGACATTAATAGACTATCAATTCTTGAAGTTTCTTCCTTCCGTTGTTGCTGCT 1311
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1256 ACAGAGTTGACATTAATAGACTACCATTTCTTAAAGTTTCTTCCTTCCGTTGTTGCTGCT 1315
Query 1312 TCAGCAGTTTTTCTTGCCAAGTGGACAATGGACCAATCAAACCACCCATGGAATCCAACA 1371
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TCAGCGGTTTTTCTCGCCAAGTGGACAATGGACCAATCAAACCACCCATGGAATCCAACA 1375
Query 1372 CTTGAGCATTACACAACGTACAAAGCATCAGATCTGAAAGCATCTGTCCATGCCTTACAA 1431
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1376 CTTGAGCATTACACAACGTACAAAGCATCGGATCTGAAAGCATCTGTTCATGCCTTACAA 1435
Query 1432 GATCTTCAGCTTAACACCAAAGGTTGCCCTTTAACCGCTATACGCATGAAGTATAGGCAA 1491
||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1436 GATCTGCAGCTTAACACCAAAGGTTGCCCCTTGAGCGCTATACGCATGAAGTATAGGCAA 1495
Query 1492 GAGAAATTCAAATCTGTGGCGGTTCTCACATCTCCCAAGCTACTTGACACGCTATTCTAA 1551
||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1496 GAGAAATACAAATCTGTGGCGGTTCTCACGTCTCCAAAGCTACTTGACACGCTATTCTGA 1555
Query 1552 AGGTTTCAACTCCTAACCAATAATAGTTTTGTCGCATTGATGGTCCAGTT-CGTCTTCAT 1610
|||||||||||||||||| |||||||||||||| ||||||||||||| || ||| |||||
Sbjct 1556 AGGTTTCAACTCCTAACCGATAATAGTTTTGTCACATTGATGGTCCAATTTCGTTTTCAT 1615
Query 1611 TCATCTGTTACTCTTTGTTCATAAAACAGAATTCCCCACAGTCCCACTCATCTAATACCT 1670
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1616 TCATCTGTTACTCTTTGTTCATAAAACAGAATTTCC-ACAGTCCCACTCATCTAATACCT 1674
Query 1671 GATTAGAATTCGGTTTAGCCTAGTTCGATCCGCCGTTTGGTTCTTCCAAACTCGG-ACAC 1729
||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||
Sbjct 1675 GATTAGAATTCGGTTTAGCCTAGTTTGATCCGTGGTTTGGTTCTTCCAAACCCGGGA-AC 1733
Query 1730 ATCTAATCGGTAACAAGAGGTTATTTTTATTGTAACGAGAATGTACATTACATTTTTCTC 1789
|||||||||||| | |||| || |||||||||||||||||||||||||| ||| |||
Sbjct 1734 ATCTAATCGGTACCTAGAGTTT-TTTTTATTGTAACGAGAATGTACATT---TTT--CTC 1787
Query 1790 CCATCTTGAGGCAATGTAAACAGATTCGGAATTT-CATATCATTTTTATGATATGAAGTA 1848
|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct 1788 CCATCTTGAGGCAATGTAAACAGATTCGGAATTTTCATATCAGTTTTCTGATATGAAGTA 1847
Query 1849 G 1849
|
Sbjct 1848 G 1848
> AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30216861
FORWARD LENGTH=1588
Length=1588
Score = 839 bits (454), Expect = 0.0
Identities = 723/853 (85%), Gaps = 18/853 (2%)
Strand=Plus/Plus
Query 705 CCCGAAATTCGTAGACATTGATTCAGATGACAAGGATCCTCTACTGTGCT-GCCTCTATG 763
|||||||||||| |||||||||||||||||||| ||||||||||| || | |||| ||||
Sbjct 736 CCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTCTG-TAGCCTTTATG 794
Query 764 CCCCTGAAATCTACTACAATTTGCGTGTTTCGGAGTTTAAACGCAGACCAGTTCCCGACT 823
| ||||| ||||||||||| |||||||| | ||| ||||||| |||||| |||| || |
Sbjct 795 CACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGACCATTTCCTGATT 854
Query 824 TTATGGAGAGAATACAGAAG-GATGTCACCCAGTCCATGCGGGGGATTCTGGTTGATTGG 882
||||||||| || ||| ||| ||||| || || | |||||||| ||||| |||||||||
Sbjct 855 TTATGGAGAAAACACA-AAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGG 913
Query 883 CTTGTAGAGGTCTCTGAAGAATACACACTTGCATCTGACACCCTCTACCTCACAGTGTAT 942
|||||||||||||| || ||||||||||||| | ||||||| || |||||||||||||||
Sbjct 914 CTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTACCTCACAGTGTAT 973
Query 943 CTCATAGACTGGTTCCTCCATGGAAACTACGTGCAAAGACAGCA-ACTTCAACTGCTCGG 1001
|||||||||||||| |||||||||||||| ||| |||||||| | ||||||| |||| ||
Sbjct 974 CTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAG-AGACTTCAATTGCTTGG 1032
Query 1002 CATCACTTGCATGCTAATTGCCTCGAAATATGAGGAAATCTGTGCGCCACGCATTGAGGA 1061
||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1033 CATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCACGCATTGAGGA 1092
Query 1062 GTTTTGCTTCATTACGGATAACACCTACACAAGAGATCAGGTCTTGGAAATGGAGAACCA 1121
||| |||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||
Sbjct 1093 GTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAAATGGAGAGCCA 1152
Query 1122 AGTACTTCA-GCATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTCAGGA 1180
|||||| || |||||||||||||||||| ||||| |||||| ||||||| ||||||||||
Sbjct 1153 AGTACT-CAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACATTCCTCAGGA 1211
Query 1181 GATTTCTTAGAGCAGCACACGCCTCTCACCTGAGCCCGAGCCTTGAAGTCGAGTTTCTAG 1240
|||||||| ||||||| || | ||| || || | || || ||| | |||||||| |
Sbjct 1212 GATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATGGAGTTTCTGG 1271
Query 1241 CCAGCTATCTAACAGAGTTGACATTAATAGACTATCAATTCTTGAAGTTTCTTCCTTCCG 1300
| | || ||||| || ||||| ||||| ||||| | ||||||||||| |||||||| |
Sbjct 1272 CGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTTCCTTC-G 1330
Query 1301 TTGTT-GCTGCTTCAGCAGTTTTTCTTGCCAAGTGGACAATGGACCAATCAAACCACCCA 1359
| | |||||||| || ||||||||||||||||||||| | ||||||||| ||||||
Sbjct 1331 ATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCAAGCCACCCT 1390
Query 1360 TGGAATCCAACACTTGAGCATTACACAACGTACAAAGCATCAGATCTGAAAGCATCTGTC 1419
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1391 TGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTC 1450
Query 1420 CATGCCTTACAAGATCTT-CAGCTTAACACCAAAGGTTGC-CCTTTAACCGCTATACGCA 1477
|| ||||| |||||| || ||||||||||||||||| || |||| ||| |||||||||
Sbjct 1451 CACGCCTTGCAAGAT-TTACAGCTTAACACCAAAGGATGTTCCTTAAACT-CTATACGCA 1508
Query 1478 TGAAGTATAGGCAAGAGAAATTCAAATCTGTGGCGGT-TCTCACATCTCCCA-AGCTACT 1535
|||||||||| || || || |||||||| |||||||| | ||| ||| | ||||||
Sbjct 1509 TGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTAT-TCAGTTCTGG-AGAGCTACC 1566
Query 1536 TGACACGCTATTC 1548
|||| |||||||
Sbjct 1567 GGACAAGCTATTC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5