BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471758
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | indole-3-acet... 867 0.0
> AT1G15580.1 | Symbols: IAA5, ATAUX2-27, AUX2-27 | indole-3-acetic
acid inducible 5 | chr1:5365665-5366497 REVERSE LENGTH=628
Length=628
Score = 867 bits (469), Expect = 0.0
Identities = 553/593 (93%), Gaps = 8/593 (1%)
Strand=Plus/Plus
Query 1 ACATTAACACCAATACTTTCAATTAAAAACATC-AATATGGCGAATGAGAGTGATAATCT 59
||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||
Sbjct 1 ACATTAACACCAATACTTTCAATCAAAAACATCAAAGATGGCGAATGAGAGTAATAATCT 60
Query 60 TGGACTTGAAATCACTGAACTAAGGCTAGGTCTTCCCGGAGATATCATCGTCGTCTCCGG 119
|||||| |||||||| |||||| |||||||||||||||||| || ||||||||||||||
Sbjct 61 TGGACTCGAAATCACCGAACTACGGCTAGGTCTTCCCGGAG--AT-ATCGTCGTCTCCGG 117
Query 120 TCAGTCTATCTTGGGGAAGAAGAGGGCCTCTCCGGAAGTGGAGAGTAACATGAAATGTGA 179
| |||| |||| |||||||||||||| ||||||||||| |||| | | ||||||||||
Sbjct 118 TGAGTCCATCTCCGGGAAGAAGAGGGCTTCTCCGGAAGTAGAGATTGATTTGAAATGTGA 177
Query 180 ACCGGCGACAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACCGGCGAAAAAGAGTCAAGTTGTGGGTTGGCCACCGGTTTGTTCGTACCGGAGAAAGAA 237
Query 240 CAGTCTTGAACAGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 299
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAGTCTCGAACGGACCAAAAGTTCGTACGTGAAAGTGAGTGTAGATGGAGCTGCATTTTT 297
Query 300 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTCGCTTCCGCTCTACAAAT 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 298 AAGGAAGATTGATTTGGAAATGTACAAATGTTACCAAGATCTTGCTTCCGCTCTGCAAAT 357
Query 360 TCTGTTCGGATGCTCTATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGTTCGGATGCTATATCAATTTTGATGATACGTTGAAGGAAAGTGAATGTGTACCAAT 417
Query 420 ATATGAAGACAAAGATGGAGATTGGATGCTTGCGGGAGACGTTCCTTGGGAGATGTTTCT 479
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 418 ATATGAAGACAAAGATGGAGATTGGATGCTTGCTGGAGATGTTCCTTGGGAAATGTTCCT 477
Query 480 TGGATCATGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGAtttt 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 TGGATCGTGCAAGAGGTTAAGGATTATGAAGAGATCATGTAACAGAGGATGAATGATATT 537
Query 540 tttAATAGTCACATGCGTATCTGAGTGAGCCTTG-AGATATCTAAATATACAT 591
| | |||||||||| | || |||||||||||| ||||||||||||||||||
Sbjct 538 T--A-TAGTCACATGTGAATGTGAGTGAGCCTTACAGATATCTAAATATACAT 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5