BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471760
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15660.1 | Symbols: CENP-C | centromere protein C | chr1:538... 3301 0.0
> AT1G15660.1 | Symbols: CENP-C | centromere protein C | chr1:5381170-5385254
FORWARD LENGTH=2375
Length=2375
Score = 3301 bits (1787), Expect = 0.0
Identities = 2169/2349 (92%), Gaps = 44/2349 (2%)
Strand=Plus/Plus
Query 1 AAATCCCATGGCCGGGGAATTTCCCGGTGATTTAGATGGCTGATGTGAGCCGGAGTTCAA 60
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 26 AAATCCCATCGCCGGGGAATTTTCCGGTGATTTAGATGGCTGATGTGAGCCGGAGTTCAA 85
Query 61 GTTTAGAT---GCGGAGGATCCTCTTCAAGCTTACTCAGGACTTTCCTTGTTTCCTCGCA 117
||||| || | ||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 86 GTTTATATACCGAGGAGGATCCCCTTCAAGCTTACTCAGGGCTTTCGTTGTTTCCTCGCA 145
Query 118 CACTAAAATCCTTGTCGAATCCTCTTCCTCCTCCTCTTCATCAATCAGAAGATCTACAGC 177
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 146 CACTAAAATCCTTGTCGAATCCTCTTCCTCCT--TCTT-ATCAATCAGAAGATCTACAGC 202
Query 178 AGACTCATACTCTCCTTGAATCTATGCCTTTTGAAGTTCAAAATGAGCATCAGGAGCAGG 237
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 203 AGACTCATACTCTCCTTCAATCTATGCCTTTTGAAATTCAAAGTGAGCATCAGGAGCAGG 262
Query 238 CAAAAGCTATCTTTGAAGATGTGAATGTTGATGTCAAGCTGAACCCTATTCCAAATAAAC 297
||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 263 CAAAAGCTATCTTAGAAGATGTGGATGTCGATGTCCAGCTGAACCCTATTCCAAATAAAC 322
Query 298 GAGAACGAAGACTGGGATTAGACCGTAAGCGAAAAAGCTTTTCTCTTAACCTTACGTCAA 357
||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 323 GAGAAAGAAGACCGGGATTAGACCGTAAGCGAAAAAGCTTTTCTCTTCACCTTACGACAA 382
Query 358 GTCAACCACCTCCAGTTGCACCAAGCTTTGATGGTAGTAAATATCCGAGACCTGAAGATT 417
|||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||
Sbjct 383 GTCAACCACCTCCAGTTGCACCAAGCTTTGATCCTAGTAAATATCCAAGATCTGAGGATT 442
Query 418 TCTTTGCTGAGTATGATAAATTTGAACTTGCCAATCGAGAATGGCAGAAACAGACTGGCT 477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TCTTTGCTGCGTATGATAAATTTGAACTTGCCAATCGAGAATGGCAGAAACAGACTGGCT 502
Query 478 CCAGTGTAATAGATACACAACAGAACCCGCCATCAAGGCGTCCTCGCAGACCAGGAATTC 537
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 503 CCAGTGTAATAGATATACAAGAGAACCCGCCATCAAGGCGCCCTCGCAGACCAGGAATTC 562
Query 538 CAGGGAGGAAACGGCGTCCATTCGAGCATACTTTTACGGATAGTTATTTCACTGATGCTA 597
||||||||||||| ||||||||| || | | |||||||||||||||||||||||||| ||
Sbjct 563 CAGGGAGGAAACGTCGTCCATTCAAGGAAAGTTTTACGGATAGTTATTTCACTGATGTTA 622
Query 598 TCAACCTGGAAGCTTCAGAAAAGGAAAACCCCATTGCTTCTGAACAAAGTTTAGAGAG-G 656
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 623 TCAACCTGGAAGCTTCAGAAAAGGAAATCCCCATTGCTTCTGAACAAAGCTTAGAGAGTG 682
Query 657 ACCACAGCTGCACATGTTACGACTGTGGACAGGGAAGTAGATGATTCAACTGTAGACACA 716
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 683 -CCACAGCTGCACATGTTACGACTGTGGACAGGGAAGTAGATGATTCAACCGTAGACACG 741
Query 717 GACAAGGACTTAAACAATATTTTGAAAGAGTTGCTTGCTTCCAGTCGAGATGAGCTCGAG 776
||||| |||||||||||| | |||||||| |||||||||| ||||||||| ||||| |||
Sbjct 742 GACAAAGACTTAAACAATGTGTTGAAAGATTTGCTTGCTTGCAGTCGAGAGGAGCTTGAG 801
Query 777 GGAGATGCTGCCGTCAAGCGTTTGGAGGATG-TCTTGCAAATCAAATCCCTTAATGTGGA 835
||||||| |||| |||||| ||||||||| | |||||||||||| ||| ||||| | ||
Sbjct 802 GGAGATGGTGCCATCAAGCTTTTGGAGGA-GCGCTTGCAAATCAAGTCCTTTAATATAGA 860
Query 836 AAAGTTCTCTATCCCTGAGTTTCAAGATGTTAGAAAAATGAA-TATGAAGGCATCTGGAA 894
||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 861 AAAATTCTCTATCCCTGAGTTTCAAGATGTTCGAAAAATGAACT-TGAAGGCATCTGGAA 919
Query 895 GTAACCCATCAAACCGAAAGAGTCTGTCAGATATACAGAATATACTGAAAGGAATTCACA 954
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 920 GTAACCCACCAAACCGAAAGAGTCTGTCAGATATACAGAATATTCTGAAAGGAACTAACA 979
Query 955 GAGTTGCGGTTCGAAAAAATAGCCACTCGCCATCCCCTCAGACTAGAAAACATTTTTCAT 1014
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 980 GAGTTGCGGTTCGAAAAAATAGCCACTCGCCATCCCCTCAGACGATAAAACATTTTTCAT 1039
Query 1015 CACCAAATCCACTAGTGGATCAGTTTTCCTTTCCTGACATCCATAATTTGCTTCCAGGAG 1074
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1040 CACCAAATCCACCAGTGGATCAGTTTTCATTTCCTGACATCCATAATTTGCTTCCAGGAG 1099
Query 1075 ATCAACAGCCTAGTGAGGTTGATGTTCAACCTCTAGCAAAAGATATAGCTAATACATCCC 1134
|||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||
Sbjct 1100 ATCAACAGCCTAGTGAGGTTAATGTACAACCTATAGCAAAAGATATACCTAATACATCCC 1159
Query 1135 CGTCTACTGTGGGTACTGTAGACGTTGCTAGCCCTTTCAACAACTCAGTGGAGAAGAGGT 1194
| ||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1160 CAACTAATGTAGGTACTGTAGACGTTGCTAGCCCTTTCAACGACTCAGTGGTGAAGAGGT 1219
Query 1195 CCGGTGAAGATGATTCTCATATTCATTCTGGCATCCATAGATCTCATTTAAGTCCAGATG 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1220 CCGGTGAAGATGATTCTCATATTCATTCTGGCATCCATAGATCTCATTTAAGTCGAGATG 1279
Query 1255 GGAATGCAGATATTTGTGTGATAGATAGCATCTCAAACCGAAATTCAGCCATGCTAGAGG 1314
||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||| ||
Sbjct 1280 GGAATCCAGATATTTGTGTGATGGATAGCATTTCAAACCGAAGTTCAGCCATGCTACAGA 1339
Query 1315 TGAATGTAGATATGCGAACAAAAGGAAAAGAGGTAGATGTGCCCATGAGTGAAAGTGGAG 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1340 AAAATGTAGATATGCGAACAAAAGGAAAAGAGGTAGATGTGCCCATGAGTGAAAGTGGGG 1399
Query 1375 CAAACAGAAACACTGGCCAAAGAGAAAATGATACTGATATCAATGAAGAAACTGATCATT 1434
|||| |||||||||||| | || ||||||||| |||| |||||||||||||||||| |||
Sbjct 1400 CAAATAGAAACACTGGCGACAGGGAAAATGATGCTGAAATCAATGAAGAAACTGATAATT 1459
Query 1435 TAGAAATGCTGGCGGAATATGCATCTAAAGAGGCTACAAGACCTTTTACTGTAGAAGAGG 1494
|||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1460 TAGAAAGGCTGGCGGAATGTGCATCTAAAGAGGTTACAAGACCATTTACTGTAGAAGAGG 1519
Query 1495 ATAGCATCCCGTATCAGCAAGGTACATCCTCAAACTCTCCGAACAGAGCTCCAGAACAAT 1554
||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 1520 ATAGCATCCCGTATCAGCAAGGTGCATCCTCAAAATCTCCAAACAGAGCTCCAGAACAAT 1579
Query 1555 ACAACAAAATGGATGGAT-CCTCTGAACATGCAGAGCACAATCAGGGACTACATGAAGAA 1613
|||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1580 ACAACACAATGGGTGGATCCCT-TGAACATGCAGAGCACAATCAGGGACTACATGAAGAG 1638
Query 1614 GAAAATGTCAACACGGACGCCGCTTCTGGACTTC-A--AGAAAATGCTCTGCAGGAGGCT 1670
|||||||||||||||| | ||||||||||||||| | ||||||||||| | ||||| |
Sbjct 1639 GAAAATGTCAACACGGGCTCCGCTTCTGGACTTCAAGTAGAAAATGCTC--C-GGAGGTT 1695
Query 1671 CACAACTCTTCACACAAACAAACAAATAAACGAAGAAAGAGAGGATCTTCTGATAGCAAT 1730
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CACAAATATTCACACAAACAAACAAATAAACGAAGAAAGAGAGGATCTTCTGATAGCAAT 1755
Query 1731 GTGAAAAAGCGAAGTAAGACTGTGCATGGTGAGACTGGAGGGGACCCGCAAATGAAAACA 1790
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1756 GTGAAAAAGCGAAGTAAGACTGTGCATGGTGAGACTGGAGGGGACAAGCAAATGAAAACA 1815
Query 1791 TTACCACATGAGAGTGGTGTgaagaagcaaaccaaaagaaaatccaacgagagagaagag 1850
||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1816 TTACCACATGAGAGTAGAGCGAAGAAGCAAACCAAAGGAAAATCCAACGAGAGAGAAGAG 1875
Query 1851 aagaagccaaagaaCACGCGTAAAACTCTTACGCGTGAGGGTAAACTATTCTCTCGCAGG 1910
|||||||| ||| | ||||||||||||| |||||| |||||||||||| |||||
Sbjct 1876 AAGAAGCC---GAA---G---AAAACTCTTACGCATGAGGGGAAACTATTCTCTTGCAGG 1926
Query 1911 AAAAGCCTTGCAGCTGCTGGTACTAAAATGGAAGGTGGTGTCAGACGAAGTACAAGGATT 1970
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1927 AAAAGCCTTGCTGCTGCTGGTACTAAAATTGAAGGTGGTGTCAGACGAAGTACAAGGATT 1986
Query 1971 AAGTCAAGACCACTCGAATACTGGAAAGGCGAAAGATTCTTGTACGGACGCATCCATGAG 2030
||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1987 AAGTCGAGACCGCTCGAATACTGGAGAGGTGAAAGATTCTTGTACGGACGCATCCATGAG 2046
Query 2031 AGTTTGACTACTGTTATCGGCATAAAGTATGCATCCCCTGGAGAAGGTAAAAGTGACTT- 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2047 AGTTTGACTACTGTTATCGGCATAAAGTATGCATCCCCTGGAGAAGGTAAAAGAGA-TTC 2105
Query 2090 GCGTGCATGTAAGGTGAAATCATTTGTCTCTGATGAGTACAAAGAGCTGGTTGATTTTGC 2149
||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 2106 GCGCGCATCTAAGGTGAAATCATTCGTCTCCGATGAGTACAAAAAGCTGGTTGATTTTGC 2165
Query 2150 CGC-TTCGCATTGA-A-GAA---TGATAATCCTAGGAAGGAAGTGATCAAACATCCTCTT 2203
||| || ||||||| | ||| |||||| |||||||||||| ||||||| |||||||||
Sbjct 2166 CGCCTT-GCATTGATATGAAGAATGATAAGCCTAGGAAGGAAATGATCAACCATCCTCTT 2224
Query 2204 GTGATCATAATTCTATTGATAGTATCTTGTGTCCACGACCTTCTCTTGGGTCCAAACTTG 2263
|||||||| | ||||||||||||||||||| | ||||||| ||| ||||||||||||
Sbjct 2225 GTGATCAT--T---ATTGATAGTATCTTGTGTCAATGACCTTCACTTAGGTCCAAACTTG 2279
Query 2264 TCACTGTCTTTCTTTAAAACCGCAACACTTT-AAGACTCTGTAAATGTAACGGAAGTTTT 2322
|||||||||||||||||||| |||||||||| |||||| || |||||||||||| |||||
Sbjct 2280 TCACTGTCTTTCTTTAAAACTGCAACACTTTTAAGACTTTGCAAATGTAACGGAGGTTTT 2339
Query 2323 CAACTTTCA 2331
|||||||||
Sbjct 2340 CAACTTTCA 2348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115712256225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5