BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471761
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15670.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1836 0.0
> AT1G15670.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:5389952-5391490 FORWARD LENGTH=1539
Length=1539
Score = 1836 bits (994), Expect = 0.0
Identities = 1146/1220 (94%), Gaps = 8/1220 (1%)
Strand=Plus/Plus
Query 1 TTCTAGAAAACTTAtctctctataaaggagccaca-----c--tcttctctc-tcacctc 52
|||||||| ||||||| |||||||||| ||||||| | ||||||||| |||||||
Sbjct 32 TTCTAGAAGACTTATCCCTCTATAAAGTAGCCACACTCTTCTGTCTTCTCTCATCACCTC 91
Query 53 attcatatctctctcaACCTGAACATTTTCtttttttCTAAATCAAGAACTTCAAATCTT 112
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 92 ATTCATATCTCTCTCAACCTGAACATTTTCATTTTTTCTAAATCAAGAACTTCAAATCTT 151
Query 113 GAAGCTTTCTAAAGCGATGGAGCTTATTCCTGATCTTCCTGAATCCGTAGCCCGCGAGTG 172
||| ||||||||| |||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 152 GAAACTTTCTAAAAAGATGGAGCTTATTCCTGATCTTCCCGAAACTGTAGCCTACGAGTG 211
Query 173 TCTCCTACGCGCCTCCTACCAGCAATTTCCACTTATGGCCTCTGTTTGCAAACTCTGGCA 232
|||||||||| |||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 212 TCTCCTACGCTCCTCCTACAAGCAATTCCCTCTTATGGCCTCTGTTTGCAAACTCTGGCA 271
Query 233 GCGAGAAATCAGACTCTCTGATTTTTTCCGACACCGGAAAGCTTCAGGTCATAGTCAAGA 292
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 272 GCGAGAAATCAGCCTCTCTGATTTTTTCCGACACCGGAAAGCTTCAGGACATAGTCAAGA 331
Query 293 GCTTCTTGTCTTGTCTCAAGCTCGGGTCGACCCGGTTAAAGAACTCGGATCGGGTAATAA 352
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 332 GCTTGTTGTCTTGTCTCAAGCTCGGGTCGACCCGGTTAAAGAACTCGTATCGGGTAATAA 391
Query 353 AACCATCCCCACGCCCGTGTACCGAATCTCGGTTCTTGAACTTGGTACCGGTCTAAGAAG 412
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 392 AACCATCCCCACCCCCGTGTACCGAATCTCGGTTCTTGAACTTGGTACCGGTCTAAGGAG 451
Query 413 CGAGCTGCCTCCGGTTCCAGGTCAATCCAACGGGTTGCCTCTGTTCTGTAGATTAGCCTC 472
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 452 CGAGCTGCCTCCGGTTCCAGGTCATTCCAACGGGTTGCCTCTGTTCTGCAGATTAGTCTC 511
Query 473 TGTCGGGTCGGATCTTGTTGTATTGGGCGGGCTTGACCCGGTTACATGGCGTACCTCTGA 532
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 512 TGTCGGGTCGGATCTTGTTGTATTGTGCGGGCTTGACCCGGTTACATGGCGTACCTCTGA 571
Query 533 TTCGGTCTTCGTTTTCAGCTTCTTGACCTCCACGTGGCGCGTCGGGAATAGCATGCCAGG 592
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 572 TTCGGTCTTCGTTTTCAGCTTCTTGACCTCCACGTGGCGCGTCGGGAAGAGCATGCCAGG 631
Query 593 TGGACCACGTTCCTTCTTCGCTTGCTCTTCGGATTCTCAACGGAACGTCTTCGTGGCGGG 652
|||||| ||||||||||| || ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 632 TGGACCGCGTTCCTTCTTTGCCTGCGCTTCGGATTCTCAACGGAACGTCTTTGTGGCTGG 691
Query 653 AGGACACGACGAAGACAAGAACGCGATGATGTCAGCTCTGATGTACGACGTGCCAGAAGA 712
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 692 AGGACACGACGAAGACAAGAACGCGATGATGTCAGCTCTGGTGTATGACGTGGCAGAAGA 751
Query 713 CAAATGGGCTTTTTTGCCGGATATGGGCCGTGAGCGAGACGAATGCACAGCTATTTTCCA 772
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CAGATGGGCTTTCTTGCCGGATATGGGCCGTGAGCGAGACGAATGCACAGCTATTTTCCA 811
Query 773 CGCTGGCAAATTCCACGTCATCGGTGGTTACGCCACGGAGGAACAAGGGCAGTTTAGTAA 832
||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 812 CGCTGGCAAATTCCATGTCATCGGTGGTTACTCCACGGAGGAACAAGGGCAATTTAGTAA 871
Query 833 AACCGCTGAATCGTTCGACGTCACCACGTGGCGGTGGAGTTCACAAGCCGACGAGTTTCT 892
||| ||||||||||||||||||||||| |||||||||||| |||||| || ||||||||
Sbjct 872 AACTGCTGAATCGTTCGACGTCACCACATGGCGGTGGAGTCCACAAGGAGAAGAGTTTCT 931
Query 893 CTCCTCGGAGATGATTACATGGTCTCCGATTTGTGCTGCCGGTGAAAACGGAGATTTATA 952
||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 932 CTCTTCGGAGATGACTATGTGGCCTCCGATTTGTGCTGCCGGTGAAAACGGAGATTTATA 991
Query 953 TGCTTGTTGTCGCCATGATCTGATGGTGATGAGAGATGACACGTGGCATAAAGTTGGGAA 1012
|||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 992 TGCTTGTTGTCGCCGTGATCTGATGATGATGAAAGATGACACGTGGTATAAAGTTGGGAA 1051
Query 1013 TCTACCTGCTGACGTGTGCAATGTGTCTTACGTGGCGGTAAGGAGGTCTGGGAAGCTGGT 1072
|||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||
Sbjct 1052 TCTACCTGCTGACGTGTGCAATGTATCTTACGTGGCGATAAGGAGGTCTGGAAACCTGGT 1111
Query 1073 TGTGATCGGTTCGGCCCGGTATGGTGAACCAAGTGTAGGGTATAATTGGGATATGAGCAA 1132
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1112 TGTGATCGGTTCGGCTCGGTACGGCGAACCAAGTGTAGGGTATAATTGGGATATGAGCAA 1171
Query 1133 TTCTCGATGGGTGAAACTGGAAACACATGAAAAATATGAAGGCCACGTTCAAGCTGGTTG 1192
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1172 TTCTCGATGGTTAAAACTGGAAACACATGATAAATATGAAGGCCACGTTCAAGCTGGTTG 1231
Query 1193 CTTCTTGGAGATATAAAAAA 1212
||||||||||||||||||||
Sbjct 1232 CTTCTTGGAGATATAAAAAA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5