BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471762
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15680.1 | Symbols: | F-box family protein | chr1:5393407-5... 1764 0.0
> AT1G15680.1 | Symbols: | F-box family protein | chr1:5393407-5394639
FORWARD LENGTH=1233
Length=1233
Score = 1764 bits (955), Expect = 0.0
Identities = 1156/1250 (92%), Gaps = 25/1250 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAATCGAGAAGTAAA-TGGGATGAAGAGTGGTTGCAAGCGTAGAATAGAGCTTCC 59
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATCGAGAAGTAAACT-GGATGAAGAGTGGTTGCAAGCGTAGAATAGAGCTTCC 59
Query 60 AGATGAAATATTGGCAGAGATAGTGGCGAGATTACCTTTTAGAAGTGTAACGAGGTTCAA 119
||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 60 AGAGGAATTATTGGCAGAGATAGTGGCGAGATTACCTTTTATAAGTATAACGAGGTTCAA 119
Query 120 GGCCGTGTGCAAAGGATGGAGATCATTAATAGAATCAACGTACTTCCGTCGTCTATTTGT 179
| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 120 GTCCGTGTGCAAAGGATGGAGATCATTAATAGAATCAACGTATTTCCGTCATCTATTTGT 179
Query 180 GTTTGCTCACCAAAAATCTTCCTCGTCGTGGTCACTCATGTGCGGGACATTTGGTTGGTC 239
||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GTTTGCTCACCGAAACTCTTCATCGTCGTGGTCACTCGTGTGCGGGACATTTGGTTGGTC 239
Query 240 AGTCCAGGAAATGGCGGGGTTCTACGGGTGCAAGAGATATGGTCTTCCCCGTAGGCTAGG 299
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AGTCGAGGAAATGGCGGGGTTCTACGGATGCAAGAGATATGGTCTTCCCCGTAGGCTAGG 299
Query 300 TTCATACATCCCGCCTCATGGCTTGGTGGATAAATATAAGATCATAGCCTGCGCGGACGG 359
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 300 TTCATACATCCCGCCTCATGGCTTGGTGGATAAACATAAGATCGTAGCCTGCACGGACGG 359
Query 360 ATTGGTTTTGCTTCGAACCGTAACGAAAGGAGAGGCGTTCA-TCGTGGGTAGCCCCGTGT 418
|||||||||||||| ||||||||||||| ||||| |||||| | ||||||||||| ||||
Sbjct 360 ATTGGTTTTGCTTCAAACCGTAACGAAAAGAGAGACGTTCAGT-GTGGGTAGCCCGGTGT 418
Query 419 TACGGCAATGGGTTCAGCTCCCACCTCACCCTTGGAAAGGGATCAGTTCATCAGTTGAGG 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TACGGCAGTGGGTTCAGCTCCCACCTCACCCTTGGAAAGGGATCAGTTCATCAGTTTTGG 478
Query 479 TAACAGGTCTAGTCACCCGAGTAGAAGACAGTGTCGTTTTGGAGTATAAGGTGGTTTGTA 538
| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 479 CGATAGGTCTAGTCACCCGAGTAGAAGACGGTGTCGTTATGGAGTATAAGGTGGTTTGTA 538
Query 539 TGGATAATGA--ACTCGGTTTGGAAGTTGAGTCCCTTATCTTTGAGATATATTCGTCAGT 596
|||||| ||| || || || ||||||||||||||||||||| ||||||||||||||| |
Sbjct 539 TGGATATTGATTAC-CG-TTGGGAAGTTGAGTCCCTTATCTTGGAGATATATTCGTCACT 596
Query 597 GACGGGAAGGTGGACTCGCAAAGAAGTCCGTTGTCCTCGTCTCATCGTTTCTTTATCCTA 656
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 597 GACGGGAACGTGGACTCGCAAAAAAGTCCGTTGTCCTAGTCTCATCGTTTCTTTATCCTA 656
Query 657 TCAAAGATGCTTGAGTTTGAACAAGATGCTTCACTGGCTTGATAACCATTATCGTTCTCG 716
| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct 657 TAAAAGATGCTTGAGTTTGAAGAAGATGCTTCACTGGCTTGACACCCATTATCGTTGTCG 716
Query 717 GAGTAATGTGGGAGCCATTGTAGCATATGACT-TCTATGCTGCTGATGATCAACAGCAGT 775
||||| ||||||||||||||||||||||| | ||||||||| ||||||| | |||||||
Sbjct 717 GAGTAGCGTGGGAGCCATTGTAGCATATGA-TGTCTATGCTGATGATGATGAGCAGCAGT 775
Query 776 GTCGCGTTATCCCTTTTCCTGATCAAAAGGCTTGCTTTAGAAGAGCTTACACTACTTCCG 835
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 776 TTCGCATTATCCCTTTTCCTGATCAAAAGGCTTGCTTTAGAAGAGCCTACACTACTTCAG 835
Query 836 GGGGATTCCTCATCTACATAGACTACATTAACAAAATCCATCTTCTGTTGAGGCTTTGGA 895
|||||||||| | | | | || ||||||||||||||||||| |||||||||||||
Sbjct 836 GGGGATTCCT--TGTG--T-G--TA--TTAACAAAATCCATCTTCTATTGAGGCTTTGGA 886
Query 896 GGCTCGAGGAGTACACAAGTGATTCAGGGAGATGGCAATTAACGCAGGAGATCAATCTAA 955
|||| || |||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 887 GGCTTGAAGAGTACACAAGTGATTCAGGGAGATGGCAACTAACGCAGGAAATAAATCTAA 946
Query 956 CATCTTTTGGCTGCGATCACCGAT-ACTTTCCGGTGGCAATGCATCCCTCTGAAACCCAT 1014
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 947 CATCTTTTGGTTGCGATCACC-ATTACTTTCCGGTGGCAATGCATCCCTCTGAAACCCAT 1005
Query 1015 ATCATTTATATGGGAAATCCGGACAAGGCTTTGGTGTCAATAGACTTGAAGACACACAAG 1074
|||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1006 ATCACTTATATGGGCAATCCGGAAAAGGCTTTGGTATCAATAGACTTGAAGACACACAAG 1065
Query 1075 CTTACACTCCACACCAAATCATCAGCTTATAGAGACACAATGGTTTACCACTATTTGCG- 1133
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1066 CTTACACTCCACACTAAATCATCGGCTTATAGAGACACAATGGTTTACCACTATTTG-GA 1124
Query 1134 TACTGTATATTTATCAGTA-AATGCAGGTTTTGATCACGACGTTTTCTACACACCCCAAT 1192
|||||| ||| ||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1125 TACTGTTTATGTATCAGTGGAA-GCAAGTTTTGATCACGACGTTTTCTACACACCCCAAT 1183
Query 1193 TCACACTCCCAACGTGGATGGGGTCGGTCCCTCGTGCACCTTCAATATAG 1242
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1184 TCACACTCCCAACGTGGATGGGGTCGGTCCCTCGTTCACCTTCAATATAG 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5