BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471767
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406025-540748... 948 0.0
> AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406025-5407486
FORWARD LENGTH=1462
Length=1462
Score = 948 bits (513), Expect = 0.0
Identities = 602/645 (93%), Gaps = 6/645 (1%)
Strand=Plus/Plus
Query 1 TGATCGCGGGTTTTTGCGTCTTTTACTTGCAAAGT-TTCGGAAAATGGAAGTGATGGATA 59
|||||||||||||| || ||||||||||||||||| || || |||||||||||||||| |
Sbjct 72 TGATCGCGGGTTTTCGCATCTTTTACTTGCAAAGTCTT-GG-AAATGGAAGTGATGGACA 129
Query 60 AATGGGTAGCTGAATTTTTCCTCCGTCGCCTACAAAATCCTAGGGTTTACGCTTCTCCTC 119
||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| |
Sbjct 130 AATGGGTAGCTGAATTTTTCCTCCGACGCCAACTAAATCCTAGGGTTTACGCTTTTCCAC 189
Query 120 TGTTATCGGCTCTGAAACCAGTAGATTCTGACGACTGTCTAAAGCTCAAGGTAACTGCTG 179
|||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||
Sbjct 190 TGTTATCGGCTCTGAAACCAGTAGATTCCGACGACTGTGTAAAACTCAAGCTAACTGCTG 249
Query 180 TTTTGCGAGACATCTCCAATTCCTTGATTCGAGGTACGGTCGACGAAGGAATGCTTGATC 239
||||||| || |||||||||||| |||||| |||||| || |||||||||||||||||||
Sbjct 250 TTTTGCGGGATATCTCCAATTCCATGATTCAAGGTACCGTAGACGAAGGAATGCTTGATC 309
Query 240 TCCTCGAGATTCTTGAGAAGCTTCTGTTGGAGGAACATTCGGTTATCATGGGGTCTCTCA 299
||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 310 TCCTCGAAATTCTTGAGAAGCTTCTGTTACAGGAACATTCGGTTATCATGGGATCTCTCA 369
Query 300 AATCTGCGTATTGCTGGACTGCTGTGGAATGCACGCTTAGGTTTATGTGGCCAGTGACTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 AATCTGCGTATTGCTGGACTGCTGTGGAATGCACGCTTAGGTTTATGTGGCCAGTGAATG 429
Query 360 CTTCGGATGGCTTCTTCGGCGACGCCCTTGAGAGGATTTGGAGGAATCGGATTGGGACAT 419
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 430 CTTCGGATGGCTTCTTCGGTGATGCCCTTGAGAGGATTTGGAGGAATCGGATTGGGACAT 489
Query 420 TGAAGGAGAGGGAGAGCGATTTGGTGACTCGTGAGTTGTTGAAATGGGAGAGTGATCTAA 479
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TGAAGGAGAAAGAGAGCGACTTGGTGACTCGTGAGTTGTTGAAATGGGAGAGTGATCTAA 549
Query 480 ACAAGGCGTTTGAGAAACCTGAGATTTACCAGAAGATTCGTGAGAGTGATCTAATCAGGT 539
|||||||||||||| |||||||||||||||||||||||||||||| | | | | ||||||
Sbjct 550 ACAAGGCGTTTGAGGAACCTGAGATTTACCAGAAGATTCGTGAGACTAA-C-A-TCAGGT 606
Query 540 ACAATGCCATCTCTCATCTCAATCAGCTTCTCAAAGAGCAGTGGGCACTACTTGGGTGTT 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 ACAATGCCATCTCTCATCTTAATCAGCTTCTCAAAGAGCAGTGGGCACTACTTGGATGTT 666
Query 600 CCTCTCTTGAATCAGTAGCTCAAAAGAGGTTTCTTAAGCGCAAGG 644
| ||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 667 CTTCTCTTGAATCAGAAGCTCGAAAGAGGTTTCTTAAGCGTAAGG 711
Score = 732 bits (396), Expect = 0.0
Identities = 455/484 (94%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 641 AAGGTGAATCAACAAGAACAGGAACATGAGCCAAGTCTTAATAAGGGGGACATGTTGGTA 700
||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 804 AAGGTGAATGAACATGAACAGGAACACGAGCCAAGTCTTAATAAGGGGGAAATGTTGGTA 863
Query 701 GCTCGAGAGCTTAAGGATTTTTTGTTGGAGATTCAAAGACTCATCGACCCT-TCCACTAG 759
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 864 GCTCGAGAGCTTAAGGATTTTTTGTTGGAGATTCAAAGACTCATCGACCCTATA-ACAAG 922
Query 760 GCAAGATCAAGAACATGACAATGCAATGGATCAGTCAGTTGATGTCACTCCTCAGCCTGA 819
|||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 923 GCAAGATCAAGAACCTAACAATGCAATGGAGCATTCAGTTGATGTCACTCCTCAGCCTGA 982
Query 820 TGGGGCAAATAGGACCGAAGCAGAAGATAGTGAGGGAACATTATCGTCTAGAAGAGTCCG 879
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
Sbjct 983 TGGGGCAAATAGGACTGATGCAGAAGATAGTGAGGGAACATCATCGTCTAGAAGAGTCAG 1042
Query 880 GCCTCATCTACCAACCCCGGAACCTCTGAATGTATCACCACTGAAGAAAGGAAGATTGGA 939
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1043 GCCTCATCTACCAACCCCGGAACCTCTGAATGTATCACCGTTGAAGAAAGGAAGATTAGA 1102
Query 940 TAGACCGCGTCCTAGAAGGCCAATGAAATTCTGGACTCCTGAAGAAGTGGCAGCTTTGAG 999
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1103 AAGACCGCGTCCCAGAAGGCCAATGAAATTCTGGACTTCTGAAGAAGTGGCAGCTTTGAG 1162
Query 1000 GGAAGGAGTGAAAGAGTATGGAAAATCATGGAAAGATATCAAGAATTCAAACCCTGTTGT 1059
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1163 GGAAGGAGTTAAAGAATATGGAAAATCATGGAAAGATATCAAGAATTCATACCCTGTTGT 1222
Query 1060 TTTGGCTGATAGGAGTGAGGTGGATTTGAAGGATAAGTGGAGGAATTTATTTGGTCGGCA 1119
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1223 TTTCGCTGATAGGAGCGAGGTGGATTTGAAGGATAAGTGGAGGAATTTACTTGGTCGTCA 1282
Query 1120 GTAG 1123
||||
Sbjct 1283 GTAG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5