BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471774
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15760.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 887 0.0
AT1G80520.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 303 9e-82
> AT1G15760.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr1:5425714-5426322 FORWARD LENGTH=609
Length=609
Score = 887 bits (480), Expect = 0.0
Identities = 573/614 (93%), Gaps = 22/614 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCTAGAACAAACCTTGAACCTTCTCTCATCCAC 60
Query 61 GAATACGGTCTTTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAAC 120
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAATACGGCCTCTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCGAC 120
Query 121 CACGAATTTCTCCAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CACGAATTTCTCCAGAGCATGGGAATCTCTATCGCCAAACACCGTCTCGAGATTCTCAAA 180
Query 181 CTCGCTCGTCGAGATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATC 240
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 181 CTCGCTCGTCGAGATCGCAAGAACTCTCCTCCTCTCACCTCTCGTTCCATCTCCAGAGTC 240
Query 241 GTGGTTGCGATTAAGAATACC-GGTAAATGTTTCTCCGATCACGTACGCGCCTGGATCCG 299
||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||
Sbjct 241 GTGACTGCGATTAAGAAAACCAGG-AAATGTTTATCCGATCACGTACGCGCCTGGATCCG 299
Query 300 CCGTGAAGAAGAGGAGTCGTCGTCTCGAGCTCTGGTGTTAGTGCCGAAGAAGACTAGCAG 359
||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 CCGTGAAGAAGAGTCGGCGTCGTCTCGAGCTCTGGTGTTGGTGCCGAAGAAGACTAGCA- 358
Query 360 CAGCGGGATTGGGAAGTGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTGTGATGCC 419
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 -A-CGGGATTGGGAAGTGGAGAGGTGGATTCCTGAAGAGGAACAAGAGATCTGTGATGCC 416
Query 420 GAGCAATGGAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 479
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAGCAATGGAAATGGTGGATTGGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 476
Query 480 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 536
Query 540 ACTTT-CTGCTCAAGATAC---------------CAAATGGGATTCAATGTTTCAGAATC 583
||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 ACTTTAC-GCTCAAGATACTTATTTTGAAGATATCAAATGGGATTCAATGTTTCAGAATC 595
Query 584 TCAAACCTACTTAG 597
||||||||||||||
Sbjct 596 TCAAACCTACTTAG 609
> AT1G80520.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr1:30276481-30277059 FORWARD LENGTH=579
Length=579
Score = 303 bits (164), Expect = 9e-82
Identities = 400/508 (79%), Gaps = 39/508 (8%)
Strand=Plus/Plus
Query 13 TGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCACGAATACGGTCTT 72
||||| |||||||||||||||||||| || ||| ||||||||||| |||| ||||||||
Sbjct 7 TGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTACGGTCTC 66
Query 73 TCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAACCACGAATTTCTC 132
|| ||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 67 TCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAATTTCTC 126
Query 133 CAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAACTCGCTCGTCGA 192
||||||||||| ||||| ||||| || ||||| |||||||| || || || ||||| ||
Sbjct 127 CAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCTCGGCGT 186
Query 193 GATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATCGTGGTTGCGATT 252
||||| || | || ||| || |||||| |||| || || | |||| || || | || ||
Sbjct 187 GATCGGAA-ACCT-TCA-CCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCCATC 243
Query 253 AAGAATACCGGTAAATGTTTCTCCGATCACGT-ACGCGCCTGGATCCGCCGTGAAGAAGA 311
||||| ||||| ||||| |||||||| || || | | ||||||||||| || || | ||
Sbjct 244 AAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGG-GCCTGGATCCGACGAGA-G--GA 299
Query 312 GGAGTCGTCGTCTCGAGCTCTGGT-GTTAGTGCCGAAGAAG-ACTAGCAGCAGCGGGATT 369
| ||||| | || |||||||| ||| ||| ||| |||| || || ||||||||||
Sbjct 300 --A-TCGTC--C-CGGGCTCTGGTCGTT-GTGTCGA-GAAGCACGAGTAGCAGCGGGAAC 351
Query 370 GGGA-AGTGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTG-TGATGCCGAGCAATG 427
|||| | |||| | ||| | || | | || ||||||| || |||||||||| || |
Sbjct 352 GGGAGA-TGGAAAAGTG-----C-GA-G-G-AAGAAGAGAT-TGGTGATGCCGAGTAACG 400
Query 428 GAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCCTTGTAGAA 487
||||||||| | | || | ||||||| | ||||||| ||||| |||||||||||
Sbjct 401 GAAATGGCG--T-CAAG--G-AAGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGC 454
Query 488 TCGATAGCTTCTC-AAGTCCCATGGTTT 514
||||||||||||| || ||| | |||||
Sbjct 455 TCGATAGCTTCTCCAA-TCCAAAGGTTT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5