BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471774 Length=597 Score E Sequences producing significant alignments: (Bits) Value AT1G15760.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 887 0.0 AT1G80520.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 303 9e-82 > AT1G15760.1 | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=609 Length=609 Score = 887 bits (480), Expect = 0.0 Identities = 573/614 (93%), Gaps = 22/614 (4%) Strand=Plus/Plus Query 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCAC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGAAGATTGGTGGTTTTCATGGCTCTCTAGAACAAACCTTGAACCTTCTCTCATCCAC 60 Query 61 GAATACGGTCTTTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAAC 120 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 GAATACGGCCTCTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCGAC 120 Query 121 CACGAATTTCTCCAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAA 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 CACGAATTTCTCCAGAGCATGGGAATCTCTATCGCCAAACACCGTCTCGAGATTCTCAAA 180 Query 181 CTCGCTCGTCGAGATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATC 240 |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || Sbjct 181 CTCGCTCGTCGAGATCGCAAGAACTCTCCTCCTCTCACCTCTCGTTCCATCTCCAGAGTC 240 Query 241 GTGGTTGCGATTAAGAATACC-GGTAAATGTTTCTCCGATCACGTACGCGCCTGGATCCG 299 ||| |||||||||||| ||| || |||||||| |||||||||||||||||||||||||| Sbjct 241 GTGACTGCGATTAAGAAAACCAGG-AAATGTTTATCCGATCACGTACGCGCCTGGATCCG 299 Query 300 CCGTGAAGAAGAGGAGTCGTCGTCTCGAGCTCTGGTGTTAGTGCCGAAGAAGACTAGCAG 359 ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| Sbjct 300 CCGTGAAGAAGAGTCGGCGTCGTCTCGAGCTCTGGTGTTGGTGCCGAAGAAGACTAGCA- 358 Query 360 CAGCGGGATTGGGAAGTGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTGTGATGCC 419 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 359 -A-CGGGATTGGGAAGTGGAGAGGTGGATTCCTGAAGAGGAACAAGAGATCTGTGATGCC 416 Query 420 GAGCAATGGAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 479 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 417 GAGCAATGGAAATGGTGGATTGGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCC 476 Query 480 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAA 536 Query 540 ACTTT-CTGCTCAAGATAC---------------CAAATGGGATTCAATGTTTCAGAATC 583 ||||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 537 ACTTTAC-GCTCAAGATACTTATTTTGAAGATATCAAATGGGATTCAATGTTTCAGAATC 595 Query 584 TCAAACCTACTTAG 597 |||||||||||||| Sbjct 596 TCAAACCTACTTAG 609 > AT1G80520.1 | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:30276481-30277059 FORWARD LENGTH=579 Length=579 Score = 303 bits (164), Expect = 9e-82 Identities = 400/508 (79%), Gaps = 39/508 (8%) Strand=Plus/Plus Query 13 TGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCACGAATACGGTCTT 72 ||||| |||||||||||||||||||| || ||| ||||||||||| |||| |||||||| Sbjct 7 TGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTACGGTCTC 66 Query 73 TCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAACCACGAATTTCTC 132 || ||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 67 TCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAATTTCTC 126 Query 133 CAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAACTCGCTCGTCGA 192 ||||||||||| ||||| ||||| || ||||| |||||||| || || || ||||| || Sbjct 127 CAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCTCGGCGT 186 Query 193 GATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATCGTGGTTGCGATT 252 ||||| || | || ||| || |||||| |||| || || | |||| || || | || || Sbjct 187 GATCGGAA-ACCT-TCA-CCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCCATC 243 Query 253 AAGAATACCGGTAAATGTTTCTCCGATCACGT-ACGCGCCTGGATCCGCCGTGAAGAAGA 311 ||||| ||||| ||||| |||||||| || || | | ||||||||||| || || | || Sbjct 244 AAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGG-GCCTGGATCCGACGAGA-G--GA 299 Query 312 GGAGTCGTCGTCTCGAGCTCTGGT-GTTAGTGCCGAAGAAG-ACTAGCAGCAGCGGGATT 369 | ||||| | || |||||||| ||| ||| ||| |||| || || |||||||||| Sbjct 300 --A-TCGTC--C-CGGGCTCTGGTCGTT-GTGTCGA-GAAGCACGAGTAGCAGCGGGAAC 351 Query 370 GGGA-AGTGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTG-TGATGCCGAGCAATG 427 |||| | |||| | ||| | || | | || ||||||| || |||||||||| || | Sbjct 352 GGGAGA-TGGAAAAGTG-----C-GA-G-G-AAGAAGAGAT-TGGTGATGCCGAGTAACG 400 Query 428 GAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCCTTGTAGAA 487 ||||||||| | | || | ||||||| | ||||||| ||||| ||||||||||| Sbjct 401 GAAATGGCG--T-CAAG--G-AAGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGC 454 Query 488 TCGATAGCTTCTC-AAGTCCCATGGTTT 514 ||||||||||||| || ||| | ||||| Sbjct 455 TCGATAGCTTCTCCAA-TCCAAAGGTTT 481 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28733932084 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5