BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471775

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15770.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   732    0.0  
  AT1G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   281    6e-75


> AT1G15770.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G15780.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:5426892-5428280 REVERSE LENGTH=947
Length=947

 Score =  732 bits (396),  Expect = 0.0
 Identities = 535/599 (89%), Gaps = 22/599 (4%)
 Strand=Plus/Plus

Query  28   AGAGATCTCAATGAAATCTACCAGATAGTGGTAGCCAAGTTGCAGCAAGAGGATTCTCTT  87
            ||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct  105  AGAGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTT  164

Query  88   CCGCAGCAGAAACTAAGACCAGATCAGTTTGAGAATTTGAAACGAGGCAAGACAGGGTTG  147
             |||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct  165  TCGCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTG  224

Query  148  GA-CAATATGCTACAATTCCTATCTCTTTCAAAGAGCAATATCAAACCTGGCTTGAA-G-  204
            ||   | |||||||  |||||||||||||||||||||||||||||||||| |||||| | 
Sbjct  225  GAGGGA-ATGCTACGTTTCCTATCTCTTTCAAAGAGCAATATCAAACCTGACTTGAAGGA  283

Query  205  --G-A--GA--A--G---G---AA-ATTATAG-ATTTCTTAAATAAGCAGAGTCTGAGAA  247
              | |  ||  |  |   |   || ||||| | |||||||||||| |||||||||||| |
Sbjct  284  TAGTATGGATTATCGCAAGAACAACATTAT-GAATTTCTTAAATATGCAGAGTCTGAGGA  342

Query  248  AGATAGTACAGAAAGGGCAGCTTTCGAAAGCTCAGATTCAGCCTATGCAGCAACCACTAT  307
            ||| ||||||||||  ||||||| ||||| || |||||||||||||||||||||||||||
Sbjct  343  AGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTAT  402

Query  308  CTCAGACAGTTCAAGATCAATCTCATGATAATCAAACAACTATGCAGATTCAATCAATGA  367
            ||||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||
Sbjct  403  CTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATGA  462

Query  368  GCAAGCAGGGTGCTGGGTCAAGGACACAACAGATCAAGCAAGGTGTAGTTCAATCCCTTG  427
            ||| |||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||
Sbjct  463  GCATGCAGGGTGCTGGGTCAAGGGTACAACAGATCAGGCAAGGTGTACTTCAATCCCTTG  522

Query  428  CAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCTTCAGGAGCTTACTAGTCCTGATG  487
             |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct  523  AAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCTTCCGGAGCTTACCAGTCCTGATG  582

Query  488  GAAATATTAGATATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA  547
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  583  GAAATATTATAAATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA  642

Query  548  TTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACCACAAGCGCTTTCTTCTGCAGTA  606
            |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||
Sbjct  643  TTGAACGCCTTATTAGAGCCATGAAATCCATCTCACCACAAGCGCTTTCGTCTGCAGTA  701


> AT1G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G10440.1); 
Has 103701 Blast hits to 43153 proteins in 1828 species: Archae 
- 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; 
Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: 
NCBI BLink). | chr1:5430183-5436412 REVERSE LENGTH=4338
Length=4338

 Score =  281 bits (152),  Expect = 6e-75
 Identities = 186/203 (92%), Gaps = 0/203 (0%)
 Strand=Plus/Plus

Query  405   GCAAGGTGTAGTTCAATCCCTTGCAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCT  464
             ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  3064  GCAAGGTGTAGTTCAGTCCCTAGCAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT  3123

Query  465   TCAGGAGCTTACTAGTCCTGATGGAAATATTAGATATCCTTTGACAAGTACTTGTGGAAA  524
             ||||||| |||||||||||||||| ||||||  | || ||| ||||| ||| | ||||||
Sbjct  3124  TCAGGAGTTTACTAGTCCTGATGGGAATATTTTAAATTCTTCGACAATTACATCTGGAAA  3183

Query  525   ATCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACC  584
             | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  3184  ACCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCGTGAAGTCCATCTCACC  3243

Query  585   ACAAGCGCTTTCTTCTGCAGTAA  607
             |||||| ||||||||||||||||
Sbjct  3244  ACAAGCCCTTTCTTCTGCAGTAA  3266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39735210277


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5