BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471775 Length=816 Score E Sequences producing significant alignments: (Bits) Value AT1G15770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 732 0.0 AT1G15780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 281 6e-75 > AT1G15770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5426892-5428280 REVERSE LENGTH=947 Length=947 Score = 732 bits (396), Expect = 0.0 Identities = 535/599 (89%), Gaps = 22/599 (4%) Strand=Plus/Plus Query 28 AGAGATCTCAATGAAATCTACCAGATAGTGGTAGCCAAGTTGCAGCAAGAGGATTCTCTT 87 ||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 105 AGAGACCTCAATGAAATCTACCAGAGAGTAGCAGCCAAGTTGCAGCAAGAGGATTCTCTT 164 Query 88 CCGCAGCAGAAACTAAGACCAGATCAGTTTGAGAATTTGAAACGAGGCAAGACAGGGTTG 147 |||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| |||| Sbjct 165 TCGCATCAGAAACAAAGATCAGATCAGTTTGAGAAATTGAAACGAGGCAAGACAGTGTTG 224 Query 148 GA-CAATATGCTACAATTCCTATCTCTTTCAAAGAGCAATATCAAACCTGGCTTGAA-G- 204 || | ||||||| |||||||||||||||||||||||||||||||||| |||||| | Sbjct 225 GAGGGA-ATGCTACGTTTCCTATCTCTTTCAAAGAGCAATATCAAACCTGACTTGAAGGA 283 Query 205 --G-A--GA--A--G---G---AA-ATTATAG-ATTTCTTAAATAAGCAGAGTCTGAGAA 247 | | || | | | || ||||| | |||||||||||| |||||||||||| | Sbjct 284 TAGTATGGATTATCGCAAGAACAACATTAT-GAATTTCTTAAATATGCAGAGTCTGAGGA 342 Query 248 AGATAGTACAGAAAGGGCAGCTTTCGAAAGCTCAGATTCAGCCTATGCAGCAACCACTAT 307 ||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 343 AGACAGTACAGAAACTGCAGCTTACGAAATCTGAGATTCAGCCTATGCAGCAACCACTAT 402 Query 308 CTCAGACAGTTCAAGATCAATCTCATGATAATCAAACAACTATGCAGATTCAATCAATGA 367 ||||||||||||||||||| ||||||||| | ||||||||| ||||||| |||||||||| Sbjct 403 CTCAGACAGTTCAAGATCAGTCTCATGATGACCAAACAACTCTGCAGATGCAATCAATGA 462 Query 368 GCAAGCAGGGTGCTGGGTCAAGGACACAACAGATCAAGCAAGGTGTAGTTCAATCCCTTG 427 ||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 463 GCATGCAGGGTGCTGGGTCAAGGGTACAACAGATCAGGCAAGGTGTACTTCAATCCCTTG 522 Query 428 CAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCTTCAGGAGCTTACTAGTCCTGATG 487 |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 523 AAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCTTCCGGAGCTTACCAGTCCTGATG 582 Query 488 GAAATATTAGATATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 547 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 GAAATATTATAAATCCTTTGACAAGTACTTGTGGAAAATCGAGTGCTACTGAGCTGCCTA 642 Query 548 TTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACCACAAGCGCTTTCTTCTGCAGTA 606 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 643 TTGAACGCCTTATTAGAGCCATGAAATCCATCTCACCACAAGCGCTTTCGTCTGCAGTA 701 > AT1G15780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430183-5436412 REVERSE LENGTH=4338 Length=4338 Score = 281 bits (152), Expect = 6e-75 Identities = 186/203 (92%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 405 GCAAGGTGTAGTTCAATCCCTTGCAATTGGCACTCCTGGGATCTCTGCCTCTCCTCTCCT 464 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 3064 GCAAGGTGTAGTTCAGTCCCTAGCAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCT 3123 Query 465 TCAGGAGCTTACTAGTCCTGATGGAAATATTAGATATCCTTTGACAAGTACTTGTGGAAA 524 ||||||| |||||||||||||||| |||||| | || ||| ||||| ||| | |||||| Sbjct 3124 TCAGGAGTTTACTAGTCCTGATGGGAATATTTTAAATTCTTCGACAATTACATCTGGAAA 3183 Query 525 ATCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCTGTGAAATCCATCTCACC 584 | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 3184 ACCGAGTGCTACTGAGCTGCCTATTGAACGCCTTATTAGAGCCGTGAAGTCCATCTCACC 3243 Query 585 ACAAGCGCTTTCTTCTGCAGTAA 607 |||||| |||||||||||||||| Sbjct 3244 ACAAGCCCTTTCTTCTGCAGTAA 3266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39735210277 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5