BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471781
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex p... 1840 0.0
AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5... 137 2e-31
> AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446462-5447859 REVERSE LENGTH=1183
Length=1183
Score = 1840 bits (996), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 14/1180 (1%)
Strand=Plus/Plus
Query 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTTTCATTATCTCACATTG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTCTCATTATCTCACATTG 60
Query 61 TCCCTCTAAATCTCCTCCCTTTGATTCTTTCTGCTCCG-AAAAC----AGAGAG---AAC 112
||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 61 TCCCTCTAAATCTCCTCTCTTTGATTCTTTCTGCTCCGAAAAACAGAGAGAGAGAACAAC 120
Query 113 AACCAAACACTCACTTCTCCACATCTTGAGAGaaaaaaaaCAGAGGAGGTATATTAGAGA 172
||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 121 AACCAAACACTCATTTCTCCACATCTTGAGAG-AAAAAAACAGAGCAAGTATATTAGAGA 179
Query 173 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 239
Query 233 CGGAGGCAAGAGGA-GTGCCACCGCATTGGGAAACGGCGTTGGCACTGGAGCTCAGAGAG 291
||||||||||| || ||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 240 CGGAGGCAAGA-GAGGTGCCACCGCATTGGCAAGCGGCGTAGGCACTGGAGCTCAGAGAG 298
Query 292 TTGGCCGGAAAACTCTGATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 351
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGGCAGGAAAACTCTTATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 358
Query 352 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCGG 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCAG 418
Query 412 GTGATTACGGGTTCGACCCACTGGGTTTGGGAAAAGACCCGGCTTTTCTGAAATGGTACA 471
| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GAGATTTCGGGTTCGACCCATTGGGTTTGGGGAAAGACCCGGCTTTTCTGAAATGGTACA 478
Query 472 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTTGTTG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 479 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTCGTCG 538
Query 532 GCCAGGCTTGGAGCGGTGTGCCTTGGTTCGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 591
||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 539 GCCAGGCCTGGAGCGGTGTGGCATGGTTTGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 598
Query 592 CCTTCTCGTTTGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCTTCTCGTTCGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 658
Query 652 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCGACGCCGTGGT 711
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 659 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCAACGCCATGGT 718
Query 712 CGAGGACCGCCGAGAATTTCGCCAACTATACCGGCGATCAGGGATATCCCGGTGGGAGAT 771
||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 719 CGAAGACCGCCGAGAATTTCGCGAACTATACCGGCGATCAGGGATACCCCGGTGGGAGAT 778
Query 772 TCTTTGATCCGTTGGGTCTCGCCGGCAAAAATCGCGACGGTGTTTATGAGCCGGACGTAG 831
|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
Sbjct 779 TCTTCGATCCGTTGGGTCTCGCCGGGAAAAACCGCGACGGTGTTTATGAGCCGGACTTTG 838
Query 832 AGAAGCTGGAGAGGCTGAAATTGGCGGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 891
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 AGAAGCTGGAGAGGCTGAAATTGGCAGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 898
Query 892 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 958
Query 952 GAGATAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTTCAAAAACCTAATG 1011
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 GAGAAAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTCCAAAAACCTAATG 1018
Query 1012 TTTCTCCTCTTCAATGTGACATTTGGGAAAAGATCATCATATCATTGCTTAAAAATGTAA 1071
|||||| |||||||||||||||||||||||||||||||| | ||||||| | ||||||||
Sbjct 1019 TTTCTCTTCTTCAATGTGACATTTGGGAAAAGATCATCAAACCATTGCT-ATAAATGTAA 1077
Query 1072 AATGAATTCATATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAG 1131
|||||| |||| ||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 1078 AATGAAATCAT--GAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAG 1135
Query 1132 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1171
||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1175
> AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5444418-5446564
FORWARD LENGTH=1631
Length=1631
Score = 137 bits (74), Expect = 2e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1083 ATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAGGGAATACTAAA 1142
||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1625 ATGAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAGGGAATACTAAA 1566
Query 1143 CATCAATGAAAGAGATCCACAACTTCATT 1171
|||||||||||||||||||||||||||||
Sbjct 1565 CATCAATGAAAGAGATCCACAACTTCATT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5