BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471782 Length=378 Score E Sequences producing significant alignments: (Bits) Value AT1G15825.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 544 3e-154 > AT1G15825.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:5448149-5448529 REVERSE LENGTH=381 Length=381 Score = 544 bits (294), Expect = 3e-154 Identities = 351/379 (93%), Gaps = 2/379 (1%) Strand=Plus/Minus Query 1 TTAACGATTAAATGGTGGTGAATCCCAAGTGGGCGGAGGAAGCTGAACCAGCGGTTGATT 60 ||||||||||||||| || ||||||||||| ||||||||||||| ||| | ||||||||| Sbjct 381 TTAACGATTAAATGGCGGGGAATCCCAAGTAGGCGGAGGAAGCTCAACAAACGGTTGATT 322 Query 61 TGAACCCATGTCCGGGTTTGGTGTAACCGGAAATGGATTATCCGGTATTGTTGGGATGGA 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 321 TGAACCCATGTCCGGGTTTGGTGTAACCGGAAACGGATTATCCGGTATTGTTGGGATGGA 262 Query 121 CTCTATTGGTGGTGCGAATGACGTCACCGGCGGTTGCCATGGATTCGTGACCTCTGGCGG 180 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 261 CTCTATTGGTGGTGCGAATGACGTCACCGGCGGTTGCCATGGATTTGTGACCTCTGGCGG 202 Query 181 CGTGGTAAAGACGGGAGTTTGGGGTGGGAAATCTCCGAGGGCTGGTGGTGTCGAGAATAC 240 |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 201 CGTGGTAAAGTCGGGAGTTTGGGGTGGGAAATCTCCGAGGACTGGTGGTGTGGAGAATAC 142 Query 241 TGGAACTGTCGGTGGATCTTGTACGGTTGGTGGTAATGTGAAAACCGGCGGGATCTCTTC 300 ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 141 TGGAATTGTCGGTGGATCTTGTACGGTCGGTGGTAATGTGAAAACCGGCGGGATCTCTTG 82 Query 301 AACCGGTGGCGGTAGAATTGGCGGGAATTCTTGAACCGGTGGAG-GAAAAATCGGTGGGA 359 ||||||||| || | ||| |||||||| |||| | ||||||||| || || | || |||| Sbjct 81 AACCGGTGGAGGCAAAATCGGCGGGAACTCTTCAGCCGGTGGAGTGAGAATT-GGCGGGA 23 Query 360 CTTCTTGAACCGGTGGAGG 378 ||||||||||||||||| Sbjct 22 AATCTTGAACCGGTGGAGG 4 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17794783146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5