BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471782

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15825.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   544    3e-154


> AT1G15825.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:5448149-5448529 REVERSE LENGTH=381
Length=381

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 351/379 (93%), Gaps = 2/379 (1%)
 Strand=Plus/Minus

Query  1    TTAACGATTAAATGGTGGTGAATCCCAAGTGGGCGGAGGAAGCTGAACCAGCGGTTGATT  60
            ||||||||||||||| || ||||||||||| ||||||||||||| ||| | |||||||||
Sbjct  381  TTAACGATTAAATGGCGGGGAATCCCAAGTAGGCGGAGGAAGCTCAACAAACGGTTGATT  322

Query  61   TGAACCCATGTCCGGGTTTGGTGTAACCGGAAATGGATTATCCGGTATTGTTGGGATGGA  120
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  321  TGAACCCATGTCCGGGTTTGGTGTAACCGGAAACGGATTATCCGGTATTGTTGGGATGGA  262

Query  121  CTCTATTGGTGGTGCGAATGACGTCACCGGCGGTTGCCATGGATTCGTGACCTCTGGCGG  180
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  261  CTCTATTGGTGGTGCGAATGACGTCACCGGCGGTTGCCATGGATTTGTGACCTCTGGCGG  202

Query  181  CGTGGTAAAGACGGGAGTTTGGGGTGGGAAATCTCCGAGGGCTGGTGGTGTCGAGAATAC  240
            |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct  201  CGTGGTAAAGTCGGGAGTTTGGGGTGGGAAATCTCCGAGGACTGGTGGTGTGGAGAATAC  142

Query  241  TGGAACTGTCGGTGGATCTTGTACGGTTGGTGGTAATGTGAAAACCGGCGGGATCTCTTC  300
            ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  141  TGGAATTGTCGGTGGATCTTGTACGGTCGGTGGTAATGTGAAAACCGGCGGGATCTCTTG  82

Query  301  AACCGGTGGCGGTAGAATTGGCGGGAATTCTTGAACCGGTGGAG-GAAAAATCGGTGGGA  359
            ||||||||| || | ||| |||||||| |||| | ||||||||| || || | || ||||
Sbjct  81   AACCGGTGGAGGCAAAATCGGCGGGAACTCTTCAGCCGGTGGAGTGAGAATT-GGCGGGA  23

Query  360  CTTCTTGAACCGGTGGAGG  378
              |||||||||||||||||
Sbjct  22   AATCTTGAACCGGTGGAGG  4



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5