BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471783
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15840.1 | Symbols: | unknown protein; Has 111484 Blast hit... 994 0.0
> AT1G15840.1 | Symbols: | unknown protein; Has 111484 Blast hits
to 29940 proteins in 1985 species: Archae - 153; Bacteria
- 40635; Metazoa - 31564; Fungi - 6444; Plants - 10232; Viruses
- 1710; Other Eukaryotes - 20746 (source: NCBI BLink).
| chr1:5451432-5452374 FORWARD LENGTH=923
Length=923
Score = 994 bits (538), Expect = 0.0
Identities = 731/819 (89%), Gaps = 33/819 (4%)
Strand=Plus/Plus
Query 80 AATCAGAAAATGATTAGTGTTTGAGCGGAGGGGATTCCATTAACAGTGGAGGAAACTGAT 139
||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 106 AATCAGAAAATGATTAGCGTTTGAGCAGAGGGGATTCCATGAACAGTGGAGGAATCTGAT 165
Query 140 CAAAGGTCTCTACCGACGA------GGCGGGAACATCCGGAGGAGGCAGCCAAGTTATTG 193
|||||| |||| | ||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 166 CAAAGGCCTCTGCGGACGAGGTTTGGGCGGGAACATCCGGAGGAGGCAACCATGTTATTG 225
Query 194 GTGGCATAGGTGGAAACTCATCCTCCGGTGGTGGAAGAGAGAACATC-GGCGGCGTTTCT 252
||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||
Sbjct 226 GTGGCATAGGTGGAAACTCATCCAACGGCGGTGGAAGAGAGAACA-CTGGCGGCGTTTCG 284
Query 253 TCTTGAAATGGTGGAGGTGGTAACCATAACGGCGGAGGTTGTGTCTGGCGGCGGAGGAGA 312
||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 285 TCTCCAAATGGTGGCGGAGGTAGCCATAACGGCGGAGGTTGTGTCTGGCGGCGGAGGAGA 344
Query 313 CGGCACCAAAGGGGGAGGAAACACTATGACTGGCGGTGGCGGTGAAGGGAAGAAGAAAAA 372
||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 345 CGGCACCAAAGGGGGCGGAAACACTATCACCGGCGGGGGCGGTGAAGGGAAGAAGAAAAA 404
Query 373 tggtggcggagagggaggaggaggtgaaggaacaagcggtgaaggaggaggcggtggtgg 432
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 405 TGGTGGCGGAGAGGGAGGAGGAGGTGAAGGAACGAGCGGTGAAGGAGGAGGTGGTGGTGG 464
Query 433 tgATGGAACCAAAGGTGGTGGAGACGGCACAAGCCGCGGTCGAGG--TGGGGACGGCCTT 490
||||||||||||||| ||||||||||||| |||| | ||| | || |||||||||||||
Sbjct 465 TGATGGAACCAAAGGCGGTGGAGACGGCATAAGCGGTGGT-G-GGCATGGGGACGGCCTT 522
Query 491 GGACGCAGTGGTGGTGGTGGG-GATGGAACCAAGGGTGGTGGTAGACGTGGGGACGGCCT 549
||| ||||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||
Sbjct 523 GGATGCAGTGGTGGTGG-GGGTGATGGAACCAAAGGTGGCGGTAGACGTGGGGATGGCCT 581
Query 550 TGGACGCGGTCTCGGACGTGGTGGTGGACGCGGAGGTTGGAAAGGGAGAAAAGGGTTTTC 609
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 582 TGGACGCGGTCTCGGACGTGGTGGTGGACGCGGTGGTTGGAATGGTAGAAAAGGGTTTTC 641
Query 610 CGGTGAAGGTGTTGTAGGAAAAGGCCAATGGCCACAGGTTTCGAATAAGTATTGATAGAG 669
||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 642 CGGCGAAGGAGTTGTAGGAAAAGGCCAATGACCACAGGTGTCGAACAAGTATTGATACAG 701
Query 670 AGGATCGCAGCTTCTCCGTCCACGATT-CTGACCGCTACCACT--T-CGTCTCCCTCTGT 725
||||||||||||||| ||||| ||||| | ||| ||||||||| | ||||| |||||||
Sbjct 702 AGGATCGCAGCTTCTGCGTCCGCGATTAC-GACTGCTACCACTGCTGCGTCTTCCTCTGT 760
Query 726 TTGATTGCTTTTGCTCCTTTACGGTTACAGCTTCTACGTTAACGTTTG--T-C--TG-A- 778
|||||||||||||||||| |||||||| |||||||||||||||||||| | | | |
Sbjct 761 TTGATTGCTTTTGCTCCTCTACGGTTAAAGCTTCTACGTTAACGTTTGACTTCACTTCAT 820
Query 779 -G----AT--GGACTCTGTTCTGTTAACGACTAAAAGGAGTAGAGACAACAAAAATCCAA 831
| || |||||||||| ||| || || ||||||||||||||||||||||| |||||
Sbjct 821 AGTCTGATATGGACTCTGTTGTGTGAATGATTAAAAGGAGTAGAGACAACAAAAGTCCAA 880
Query 832 CTACGAGTAGTTGTTTTGCTTTGATCATCTCTTTGTGTT 870
| |||||||||||||||||||| ||||||||||||||||
Sbjct 881 CCACGAGTAGTTGTTTTGCTTTCATCATCTCTTTGTGTT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5