BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471787
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15880.1 | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5... 1670 0.0
> AT1G15880.1 | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458535-5460333
REVERSE LENGTH=1099
Length=1099
Score = 1670 bits (904), Expect = 0.0
Identities = 1025/1081 (95%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 1 GTACGCAGAAATTCTGCCTGCGTCTCCGAACCAACTC--T-C-GATC-CGATCCGATCCG 55
|||||||||||||||| |||||||||||||||||||| | | || | ||||||||||
Sbjct 1 GTACGCAGAAATTCTGTCTGCGTCTCCGAACCAACTCTATCCTTCTCTCAATCCGATCCG 60
Query 56 TT---TT-A-TACTTCTCTCAATTTCGAACCAATTGGATCGCATCTTTCGGGGGCTCCAA 110
|| || | ||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 61 TTCCGTTCACTACTTGTCTCAATTTCGAACCAATTGGATCGCATCTTTTAGGGGCTCAAA 120
Query 111 CCTTTGGTGACGAAGACGAGGAGGAAGATTGTCGCATCTGATTTATATCGGAGAAAAGGT 170
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 121 CCTTTGGTGACGAGGACGAGGAAGAAGATTGTCGCATCTGATTTATATCGGA-AAAAGGT 179
Query 171 CTCTTGCCGGAAAAGACACGATCCGCTTTCATAAAGGAGAGATTTTTACAGATTCAGTGG 230
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 180 CTCTTGCCGGAAAGGACACGATCCGCTTTCATAAAGGAGAGATTTTGACAGATTCAGTAG 239
Query 231 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 299
Query 291 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCAACAAAGGCTTTATCAA 350
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCCACAAAGGCTTTATCAA 359
Query 351 AGTCAGATGGTTCA-GAGACTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTC 409
| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCAGATGGTA-ATGAGAGTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTG 418
Query 410 CAACAAGTTAATGCCCAGATGCAAGCATGGGTTTCTTCAGGTGGATCAGAAATGGTCTCC 469
|||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 419 CAACAAGTTAATGCTCAGATGCAAGCATGGGTATCTTCTGGTGGGTCAGAAATGGTCTCC 478
Query 470 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 538
Query 530 CGGTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 589
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGCTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 598
Query 590 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAATCCCTGATCAAGGAA 649
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAAGCCCTGATCAAGGAA 658
Query 650 CATATGGGAATCAACCGCAATACGGCACAAATGGATGGTGTCATTTCACAAGCTCAGGCA 709
||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 659 CATATGGGAATCAACCGCAATACAGCTCAGATGGACGGTGTCATTTCACAAGCTCAGGCA 718
Query 710 ACACTCGGTACTCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 769
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACACTCGGTACGCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 778
Query 770 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAAAGGAAAAAG 829
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAGAGGAAAAAG 838
Query 830 TCGATGGATACAATCATTCTTTCACTTGTTGCGGCTGTATGCACATTTCTCATATTCATT 889
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 TCGATGGATACAATCATTCTTTCACTCGTTGCGGCTGTATGCACATTTCTCATATTCATT 898
Query 890 TACTGGATAACCAAGTAGAATTTGCCCATT-CTTTCGTCTCATCTCTATGTTGGGCCACG 948
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 899 TACTGGATAACCAAGTAGAATTTGCCCATTTCTTTCGTTTCATCTTTATGTTGGGCCACG 958
Query 949 TCTGGTTTCCCCATGATGTTAATTTGTTCTGCAATTATCGGTGTTCGAGTAAAGAATCTA 1008
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 959 TCTGGTTTTCCCATGATGTCAATTTGTTCTGCAATTATCGGTGTTCTAGTAAAGAATCTA 1018
Query 1009 AAGATGATCAAAAACATAAATATTGTGTACAGCAAATTCCATCCATGTCTTTGCAGTCTA 1068
||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1019 AAGAT---CAAAAACATAAATATTGTGTACAGAAAATTTCATCCCTGTCTTTGCAGTCTA 1075
Query 1069 G 1069
|
Sbjct 1076 G 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52359168435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5