BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471787 Length=1069 Score E Sequences producing significant alignments: (Bits) Value AT1G15880.1 | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5... 1670 0.0 > AT1G15880.1 | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458535-5460333 REVERSE LENGTH=1099 Length=1099 Score = 1670 bits (904), Expect = 0.0 Identities = 1025/1081 (95%), Gaps = 17/1081 (2%) Strand=Plus/Plus Query 1 GTACGCAGAAATTCTGCCTGCGTCTCCGAACCAACTC--T-C-GATC-CGATCCGATCCG 55 |||||||||||||||| |||||||||||||||||||| | | || | |||||||||| Sbjct 1 GTACGCAGAAATTCTGTCTGCGTCTCCGAACCAACTCTATCCTTCTCTCAATCCGATCCG 60 Query 56 TT---TT-A-TACTTCTCTCAATTTCGAACCAATTGGATCGCATCTTTCGGGGGCTCCAA 110 || || | ||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct 61 TTCCGTTCACTACTTGTCTCAATTTCGAACCAATTGGATCGCATCTTTTAGGGGCTCAAA 120 Query 111 CCTTTGGTGACGAAGACGAGGAGGAAGATTGTCGCATCTGATTTATATCGGAGAAAAGGT 170 ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 121 CCTTTGGTGACGAGGACGAGGAAGAAGATTGTCGCATCTGATTTATATCGGA-AAAAGGT 179 Query 171 CTCTTGCCGGAAAAGACACGATCCGCTTTCATAAAGGAGAGATTTTTACAGATTCAGTGG 230 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 180 CTCTTGCCGGAAAGGACACGATCCGCTTTCATAAAGGAGAGATTTTGACAGATTCAGTAG 239 Query 231 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ACGCCATGGATGTGCCTAGCTCTTGGGATGCTTTACGGAAACAGGCTAGAAAGATTGAAG 299 Query 291 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCAACAAAGGCTTTATCAA 350 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 300 CTCAGCTTGACGAGCAGATGCATTCATATCGTAGACTTGTTTCCACAAAGGCTTTATCAA 359 Query 351 AGTCAGATGGTTCA-GAGACTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTC 409 | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 360 AATCAGATGGTA-ATGAGAGTGATCTTGAAGCTGGGATTGACTTACTTCTTAGGCAACTG 418 Query 410 CAACAAGTTAATGCCCAGATGCAAGCATGGGTTTCTTCAGGTGGATCAGAAATGGTCTCC 469 |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 419 CAACAAGTTAATGCTCAGATGCAAGCATGGGTATCTTCTGGTGGGTCAGAAATGGTCTCC 478 Query 470 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CATACTTTAACTCGACATCAAGAGATCCTTCAAGATCTGACACAGGAGTTTTATCGACAC 538 Query 530 CGGTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 589 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CGCTCCAGTCTTAGAGCAAAACAAGAGCATGCTTCACTTCTTGAGGACTTTAGAGAATTT 598 Query 590 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAATCCCTGATCAAGGAA 649 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 599 GATCGGACTAGATTAGATTTAGAAGATGGATATGGGTCTGAACAAGCCCTGATCAAGGAA 658 Query 650 CATATGGGAATCAACCGCAATACGGCACAAATGGATGGTGTCATTTCACAAGCTCAGGCA 709 ||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| Sbjct 659 CATATGGGAATCAACCGCAATACAGCTCAGATGGACGGTGTCATTTCACAAGCTCAGGCA 718 Query 710 ACACTCGGTACTCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 769 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ACACTCGGTACGCTTGTGTTTCAACGTTCAACTTTTGGAGGCATCAACTCAAAGCTTAGC 778 Query 770 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAAAGGAAAAAG 829 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 779 AATGTCGCCAGCCGTCTACCTACGGTGAACACTATTCTGGCAGCGATAAAGAGGAAAAAG 838 Query 830 TCGATGGATACAATCATTCTTTCACTTGTTGCGGCTGTATGCACATTTCTCATATTCATT 889 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 839 TCGATGGATACAATCATTCTTTCACTCGTTGCGGCTGTATGCACATTTCTCATATTCATT 898 Query 890 TACTGGATAACCAAGTAGAATTTGCCCATT-CTTTCGTCTCATCTCTATGTTGGGCCACG 948 |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| Sbjct 899 TACTGGATAACCAAGTAGAATTTGCCCATTTCTTTCGTTTCATCTTTATGTTGGGCCACG 958 Query 949 TCTGGTTTCCCCATGATGTTAATTTGTTCTGCAATTATCGGTGTTCGAGTAAAGAATCTA 1008 |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 959 TCTGGTTTTCCCATGATGTCAATTTGTTCTGCAATTATCGGTGTTCTAGTAAAGAATCTA 1018 Query 1009 AAGATGATCAAAAACATAAATATTGTGTACAGCAAATTCCATCCATGTCTTTGCAGTCTA 1068 ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 1019 AAGAT---CAAAAACATAAATATTGTGTACAGAAAATTTCATCCCTGTCTTTGCAGTCTA 1075 Query 1069 G 1069 | Sbjct 1076 G 1076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52359168435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5