BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471794
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15950.1 | Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reduc... 2030 0.0
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion trans... 599 2e-170
> AT1G15950.1 | Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reductase
1 | chr1:5478754-5482180 FORWARD LENGTH=1401
Length=1401
Score = 2030 bits (1099), Expect = 0.0
Identities = 1243/1311 (95%), Gaps = 16/1311 (1%)
Strand=Plus/Plus
Query 1 AGCATTCATAGTCTCTCGAAAGCCTTCTTGCCAGAAACGAAGCTCTTACTTTCGAGTTTC 60
|||||||||||||||||||||||| |||| ||||| ||||| | | |||| | ||||
Sbjct 35 AGCATTCATAGTCTCTCGAAAGCC-TCTTTTCAGAACCGAAG--C-T-CTTT--ACTTTC 87
Query 61 GACCACCGGGAAATATGCCAGTCGACGAAGCATCACCGGCCGGAAAAACAGTCTGCGTCA 120
| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 88 GTCCACCGGGAAATATGCCAGTCGACGTAGCCTCACCGGCCGGAAAAACCGTCTGCGTCA 147
Query 121 CCGGAGCAGGTGGTTACATCGCTTCTTGGATTGTTAAGATACTTCTGGAGAGAGGTTACA 180
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 148 CCGGAGCTGGTGGATACATCGCTTCTTGGATTGTTAAGATACTTCTCGAGAGAGGTTACA 207
Query 181 CAGTCAAAGGAACCGTACGGAATCCAGATGATCCGAAGAACACACATTTGAGAGAACTAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CAGTCAAAGGAACCGTACGGAATCCAGATGATCCGAAGAACACACATTTGAGAGAACTAG 267
Query 241 AAGGAGCAAAGGAGAGACTGATTCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTCA 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 268 AAGGAGGAAAGGAGAGACTGATTCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTTA 327
Query 301 AGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCGGTCACCGACGATC 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 328 AGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATC 387
Query 361 CGGAACAAATGGTGGAGCCGGCAGTGAACGGAGCCAAGTTTGTAATCAATGCTGCGGCTG 420
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 388 CGGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCTGCGGCTG 447
Query 421 AAGCCAAGGTCAAGCGCGTGGTCATCACCTCCTCCATTGGTGCCGTTTACATGGACCCGA 480
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 448 AGGCCAAGGTCAAGCGCGTGGTCATCACCTCCTCCATTGGTGCCGTCTACATGGACCCGA 507
Query 481 ACCGTGACCCTGAGGCTGTCGTTGACGAAAGTTGTTGGAGTGATCTTGACTTCTGCAAGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 508 ACCGTGACCCTGAGGCTGTCGTTGACGAAAGTTGTTGGAGTGATCTTGACTTCTGCAAAA 567
Query 541 ACACCAAGAATTGGTATTGTTACGGCAAGATGGTGGCGGAACAAGCGGCGTGGGAGACGG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 568 ACACCAAGAATTGGTATTGTTACGGCAAGATGGTGGCGGAACAAGCGGCGTGGGAGACAG 627
Query 601 CGAAGGAGAAAGGTGTTGACTTGGTGGTGTTGAATCCGGTGCTGGTTCTTGGACCGCCGT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CAAAGGAGAAAGGTGTTGACTTGGTGGTGTTGAATCCGGTGCTGGTTCTTGGACCGCCGT 687
Query 661 TACAGCCGACGATCAACGCCAGCCTTTACCACGTCCTTAAATATCTAACCGGCTCAGCTA 720
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 688 TACAGCCGACGATCAACGCCAGTCTTTACCACGTCCTCAAATATCTAACCGGCTCGGCTA 747
Query 721 AGACTTATGCTAATTTGACTCAGGCTTATGTGGATGTTCGCGATGTCGCGCTGGCTCATG 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 748 AGACTTATGCTAATTTGACTCAAGCTTATGTGGATGTTCGCGATGTCGCGCTGGCTCATG 807
Query 781 TTCTGGTCTATGAGGCACCGTCGGCCTCCGGACGTTATCTCCTAGCCGAGAGCGCTCTTC 840
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 808 TTCTGGTCTATGAGGCACCCTCGGCCTCCGGACGTTATCTCCTAGCCGAGAGTGCTCGCC 867
Query 841 ACCGTGGCGAAGTTGTTGAGATTCTGGCTAAGTTATTCCCGGAGTATCCACTTCCGACCA 900
|||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 868 ACCGCGGGGAAGTTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCA 927
Query 901 AGTGCAAGGATGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAAAAGATTA 960
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 928 AGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTA 987
Query 961 AAGACTTGGGCTTAGAGTTCACATCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCT 1020
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 988 AGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCT 1047
Query 1021 TACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCT--TCA---A-CATCGCAAGGATCCG 1074
||||||||||||||||||||||||||||||||||| || | ||||||||| |||||
Sbjct 1048 TACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCTCCTCCTTCAGCATCGCAAGAATCCG 1107
Query 1075 TCGAAAATGGCATTAAGATCGGGTCTTGAAAAACTTATTTATTCCCTCAAGTATCCCCCT 1134
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1108 TGGAAAATGGCATTAAGATCGGGTCTTGAAAAGCTTATTAATTCCCTCAAGTATCCCCCT 1167
Query 1135 TAAGTATCCTTAACCATTGAAATTGCTTTTGTTTTTTGTCTCTGGTTGTGTGAAACCTCT 1194
||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 1168 TAAGTATCCTTAACCATTGAAGTTGCTTTTGTTTGTTGTCTCTGGTTATGTGAAACCTCT 1227
Query 1195 GTTTCAA-ATTGTCTTGTCTGGTTATGAATCTGTATA-TCAGTTCTTTAGCCAAACCGTT 1252
||||||| || |||| ||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1228 GTTTCAATAT-GTCTCGTCTGGTTATGAATCTGTACACTCAGTTCTTTGGCCAAACCGTT 1286
Query 1253 TGATGGATTTTGTAGACAAGGCTTCATGTTTGATCTATGTAATAGATTACA 1303
||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1287 TGATGGATTTTGTAGTCAAGTCTTCATGTTTGATCTATGTAATAGATTACA 1337
> AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter
6 | chr1:5481665-5485082 REVERSE LENGTH=2137
Length=2137
Score = 599 bits (324), Expect = 2e-170
Identities = 383/410 (93%), Gaps = 9/410 (2%)
Strand=Plus/Minus
Query 902 GTGCAAGGATGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAAAAGATTAA 961
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2094 GTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTAA 2035
Query 962 AGACTTGGGCTTAGAGTTCACATCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCTT 1021
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCTT 1975
Query 1022 ACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCT--TCA---A-CATCGCAAGGATCCGT 1075
|||||||||||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 1974 ACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCTCCTCCTTCAGCATCGCAAGAATCCGT 1915
Query 1076 CGAAAATGGCATTAAGATCGGGTCTTGAAAAACTTATTTATTCCCTCAAGTATCCCCCTT 1135
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1914 GGAAAATGGCATTAAGATCGGGTCTTGAAAAGCTTATTAATTCCCTCAAGTATCCCCCTT 1855
Query 1136 AAGTATCCTTAACCATTGAAATTGCTTTTGTTTTTTGTCTCTGGTTGTGTGAAACCTCTG 1195
|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 1854 AAGTATCCTTAACCATTGAAGTTGCTTTTGTTTGTTGTCTCTGGTTATGTGAAACCTCTG 1795
Query 1196 TTTCAA-ATTGTCTTGTCTGGTTATGAATCTGTATA-TCAGTTCTTTAGCCAAACCGTTT 1253
|||||| || |||| ||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 1794 TTTCAATAT-GTCTCGTCTGGTTATGAATCTGTACACTCAGTTCTTTGGCCAAACCGTTT 1736
Query 1254 GATGGATTTTGTAGACAAGGCTTCATGTTTGATCTATGTAATAGATTACA 1303
|||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1735 GATGGATTTTGTAGTCAAGTCTTCATGTTTGATCTATGTAATAGATTACA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5