BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471796
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein |... 2237 0.0
> AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein
| chr1:5486319-5488868 REVERSE LENGTH=1658
Length=1658
Score = 2237 bits (1211), Expect = 0.0
Identities = 1482/1604 (92%), Gaps = 53/1604 (3%)
Strand=Plus/Plus
Query 1 TTTTCTGAAGTCAAAAGGtttcttttttcttcactgttccaagattttcttttgttgctc 60
||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 54 TTTTCTGAAGTCAAAAGCTTT-TTTTTTCTTCATTGTTCAAAGATTTTATTTTGTTGCTC 112
Query 61 attgtttctaaatttacttttcTCGTGAACACAACAAGCAACTTGGCTTGGTTTTGCTAG 120
||||||||||| || ||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 113 ATTGTTTCTAACCTTGCTTTTCTCGTGAACACAGCAAGCAACTTGGTTTAGTTTTACTAG 172
Query 121 AAGATTCCTAAAAATGAGATATTTAGCGGTGAC-AAAAAGTTTCA-TTTGGGTGCTAATG 178
||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 173 AAGATTCCTAAAAATGAGATATTTAGCGGTGACAAAAAAGTTTCATTTTTGGTGCTAATG 232
Query 179 TAGCTGTAAAGTCTAGGCCTTTCGATATATAATCTCTTGAATTAGGTTACGAAACTGTTG 238
||||||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||
Sbjct 233 TAGCTGTAAAGTCTAGGCCTTCCGATATATAATCTCTTGAAATAAGTTTCGAGACTGTTG 292
Query 239 AAAATAGCTATTTTGTTGTTG-T-TGTGATCCAGTGATAGATCTGTGAAATCAAAAAAGC 296
||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 293 GAAATAGCAATTTTGTTGTTGTTGTGTGATCCAGTGATAGATCTGTGAAATC-AAAAAGC 351
Query 297 ATTTTCTTTGTGAGAATCGGGTCAATGTCGGTTCCGCCTCGATTCCGGTCCGTAAATTCC 356
| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 352 AGTTT-TTTGTGAGAATCGGGTCAATGTCGGTTCCTCCTAGATTCCGGTCCGTAAATTCC 410
Query 357 GATGAGCGAGAGTTCCGATCAGTTCTTGGTCCTACCGGGAACAAGCTGCAGAGGAAACCG 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GATGAGCGAGAGTTCCGATCAGTTCTTGGTCCTACCGGGAACAAGCTGCAGAGGAAACCA 470
Query 417 CCGGGGATGAAACTGGAGAAGCCGATGATAGAGAAGAAGACCATCATCGAGTCAAAAGAT 476
||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||
Sbjct 471 CCGGGGATGAAACTGGAGAAGCCGATGAT-G-G-AGAAGACCATCATCGACTCAAAAGAT 527
Query 477 GAAGAAA-CGAAGAAACCAACTACTCCGGCTTCTCCAAGGACGACTTTGAAGCAATGCTC 535
| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 528 G-AGAAAGCGAAGAAACCAACTACTCCGGCTTCACCAAGGACGACTCTGAAGCAATGCTC 586
Query 536 GTCTCTTTGCTCTTCGATTTTGAGAAAGAACAGTGCCTCGATGACTGCTTCCTATTCCTC 595
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 587 GTCTCTTTGCTCTTCGATTTTGAGAAAGAATAGTGCTTCAATGACTGCTTCGTATTCCTC 646
Query 596 TGATGCTTCGTCTTCGTGTGAGTCATCGCCTTTGAGCGTGGCTTCTTCTTCGAGCTGTAA 655
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 647 TGATGCTTCGTCTTCGTGTGAGTCATCGCCTTTGAGCGTGGCGTCTTCTTCGAGCTGTAA 706
Query 656 GAAGGTTATGAGGCGAAGCGGGTCTGTCTCTTCTACAAGGAAGCTGAGTGTTGGGAAAGA 715
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GAAGGTTGTGAGGCGAAGTGGGTCTGTCTCTTCTACAAGGAAGCTGAGTGTTGGGAAAGA 766
Query 716 AGAGGACAAGGTTGCTGGTGATTGCTTCGCTGATGGTCGTAGAAGGTGTGCTTGGATCAC 775
||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 767 AGAAGAGAAGGTTTCTGGTGATTGCTTCGCTGATGGTCGTAAAAGGTGTGCTTGGATCAC 826
Query 776 ACCTAAAGCTGACCCGTGCTATGTTGCTTTCCACGACGAAGAATGGGGAGTTCCTGTAGA 835
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 827 ACCTAAAGCTGACCCGTGCTATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACA 886
Query 836 TGACGACAAGAAGCTTTTCGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCCTG 895
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 887 TGACGACAAGAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCATG 946
Query 896 GACCGACATTCTCTCCAGAAGACAGT-TACTCAGGGAAGTTTTTATGGACTTCGATCCAG 954
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 947 GACCGACATTCTCTCCAGAAGACA-TATACTCAGGGAAGTTTTTATGGACTTCGATCCAG 1005
Query 955 TTGCTGTTTCTGAAATGAATGACAAAAAGTTAACAGCGCCCGGCACTGCTGCCATTTCCT 1014
| ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1006 TCGCTGTAGCTGAATTGAATGACAAAAAGTTAACAGCGCCAGGTACTGCTGCCATTTCCT 1065
Query 1015 TACTATCAGAGGTCAAGATACGGTCAATCCTCGATAACGCACGCCATGTGCGCAAGATTA 1074
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1066 TACTATCAGAGGTCAAGATACGATCAATCCTCGATAACTCACGCCATGTGCGCAAGATTA 1125
Query 1075 TAGCTGAATGCGGATCATTTAAGAAGTACATGTGGAACTTTGTGAACAACAAGCCTACAC 1134
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TAGCTGAATGTGGATCATTGAAGAAGTACATGTGGAACTTTGTGAACAACAAGCCTACAC 1185
Query 1135 AGAGCCAATTCAGGTATCAGCGCCAAGTCCCCGTGAAGACATCGAAAGCAGAGTTTATCA 1194
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1186 AGAGCCAATTCAGGTATCAGCGCCAAGTCCCTGTGAAGACATCGAAAGCTGAGTTTATAA 1245
Query 1195 GCAAAGATCTTGTACGCAGAGGCTTTCGCAGCGTTAGTCCAACAGTTATTTACTCCTTCA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCAAAGATCTTGTACGCAGAGGCTTTCGCAGCGTTAGTCCAACAGTTATTTACTCCTTCA 1305
Query 1255 TGCAAGCAGCTGGACTCACGAATGATCATCTCATAGGGTGCTTCAGATTCCAAGACTGTT 1314
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1306 TGCAAGCAGCTGGACTCACGAATGATCATCTCATAGGCTGCTTCAGATACCAAGACTGTT 1365
Query 1315 GCGTAGATGCAGAaacaacaacaacaacaacGAAGGCGAAGAAGAAGAACGAGAGAGAGA 1374
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1366 GCGTAGATGCAGAGACAACAACAACAAC---GAAGGCGAAGAAGAAGAACGAGAGAGAGA 1422
Query 1375 CTGATAAATAAGAGCAATCCTGAAATAAGCTAATTAACGTATTTGAGTACCACCAT-GTT 1433
|||||||||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 1423 GTGATAAATAAGAGCCATTCTGAAATAAGCTAATTAACGTATTTGAGTACCAATGTTGTT 1482
Query 1434 -GTT-TG-----AGA--TTAATTGACACAAGGAGGTTTTGTTACCGTGA--T-TT-T--G 1478
||| || ||| ||||||||||||| |||||||||||||||||| | || | |
Sbjct 1483 TGTTCTGCTTCCAGAGATTAATTGACACAACGAGGTTTTGTTACCGTGACGTGTTCTTAG 1542
Query 1479 ----GC-----G-T-T-GTATAGATGC-TTCTTGGTTATCGGCTT-ATGCACATATAGTA 1524
| | | | ||||||||| || ||||||||||| || ||||| || |||
Sbjct 1543 TTTTGTATTTTGGTGTTGTATAGATGTATT-TTGGTTATCGG-TTCATGCA--TA--GTA 1596
Query 1525 GAATGTTGCGATGAACTCTTAGACCGGACATATTTGTGTGGATC 1568
||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1597 GAATGTTGCGATGAACTCTTAGACCAGACGTATTTGTGTGAATC 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5