BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471797
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15980.1 | Symbols: NDF1, NDH48 | NDH-dependent cyclic elect... 2446 0.0
> AT1G15980.1 | Symbols: NDF1, NDH48 | NDH-dependent cyclic electron
flow 1 | chr1:5489298-5491363 FORWARD LENGTH=1566
Length=1566
Score = 2446 bits (1324), Expect = 0.0
Identities = 1492/1571 (95%), Gaps = 19/1571 (1%)
Strand=Plus/Plus
Query 1 AAAAAACCTTCCAATGG---CTTCACTTCCTCTGTTACCCAAACCCATTTCCCCATTCTT 57
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAAAACCTTCCAATGGCTTCTTCACTTCCTCTGTTACCCAAACCCATTTCCCCATTCTT 63
Query 58 CAAAACGCCGCCGTTTTCTACCTCCAAACCACTCGTCTTCCTCAACTTTCAAACTCGGCT 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 64 TAAAACGCCGCCGTTTTCTACCTCCAAACCACTCGTCTTCCTCAACTTTCAAACTCGTCT 123
Query 118 TACTTCGAGATCTTCCGATGTCTCGGTCAATCTCAAGAAGAAGATTAACCCGTGGCTCGA 177
||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 124 TACGTCGAGATCTTCCGATGTATCGGTCAATCTCAAGAAGAAGAATAATCCGTGGCTCGA 183
Query 178 CCCGTTTGATAGCGGTGAAGACCCGGAAAACGAATACGGGTCCTTGTTTGTCGACGGAAA 237
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 184 CCCGTTTGATAGCGGTGAAGACCCGGATAACGAATACGGGTCCTTGTTTGCCGACGGAAA 243
Query 238 ACAAGATGAGGATCCACGACCACCGGATAATCCTGATAACCCTTACGGGTTCTTGAAGTT 297
|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 244 ACAAGACGAGGATCCAAGACCACCGGATAATCCTGATAACCCTTACGGCTTCTTGAAGTT 303
Query 298 TCCCAAGGGTTACACCGTCGAGCTTGCTTCTTTGCCGTTGAAAATCAGAGGAGATGTTAG 357
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 TCCAAAGGGTTACACCGTCGAGCTTGCTTCTTTACCGTTGAAAATCAGAGGAGATGTTAG 363
Query 358 ACGATGTTGCTGCGTTATCTCCGGTGGCGTTTACGAGAATTTACTCTTTTTCCCGACAAT 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 364 ACGATGTTGCTGCGTTATCTCCGGTGGCGTTTACGAGAATCTACTCTTTTTCCCGACTAT 423
Query 418 TCAGATAATCAAAGACAGGTATCCTGGTGTTCAGGTAGATATATTAACGACTGATAGAGG 477
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 424 TCAGCTAATCAAAGACAGGTATCCTGGTGTTCAGGTAGATATATTAACGACTGAAAGAGG 483
Query 478 AAAACAAACATACGAATTAAACAAAAACGTGAGATGGGCAAATGTGTATGATCCAGATGA 537
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 484 AAAACAAACATACGAGCTAAACAAAAACGTGAGATGGGCCAATGTGTATGATCCGGATGA 543
Query 538 TCATTGGCCTGAACCTGCTGAATACACAGACATGATCGGAATCCTCAAAGGAAGGTACTA 597
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 544 TCATTGGCCTGAACCAGCTGAATACACAGACATGATCGGACTCCTCAAAGGAAGGTACTA 603
Query 598 TGACATGATTCTGTCCACGAAGCTCGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGAC 657
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 604 TGACATGGTTCTGTCCACGAAGCTAGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGAC 663
Query 658 AACGGCTCGAGACAGGGTTAGTTACATTTACCCGAATGTTAACTCTGCAGGAGCTGGTCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AACGGCTCGAGACAGGGTTAGTTACATTTACCCGAATGTTAACTCTGCAGGAGCTGGTCT 723
Query 718 GATGCTGTCTGAGACCTTTACCGCAGAAAATGCCAACCTTTCAGAATTAGGCTATAGCAT 777
||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 724 GATGCTGTCCGAGACCTTTACAGCAGAAAATACCAACCTTTCAGAATTAGGTTATAGCAT 783
Query 778 GTATGA-TCAGATGGAAGATTGGTTAGGAAGACCATTTAGGAGTGTTCCAAGGACTCCTG 836
|||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 GTAT-ACTCAGATGGAAGATTGGTTAGGAAGACCGTTTAGGAGTGTTCCAAGGACTCCTC 842
Query 837 TGTTGCCACTTAGGGTATCGATTTCACGGAAATTGAAAGAGGTTGTGGCTG-AGAAGTAT 895
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 843 TGTTGCCACTTAGGGTATCGATTTCACGGAAAGTGAAAGAGGTTGTGGCTGCA-AAGTAT 901
Query 896 AGGAATGCTGGAGCAGCCACAGGGAAGTTTATAGTGATTCATGGGATTGAATCGGATTCT 955
|||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct 902 AGGAATGCTGGAGCAGTGACGGGGAAGTTTATAGTGATTCATGGTATTGAATCAGATTCT 961
Query 956 AAAGCATCAATGCAATCAAAAGGAGATAG-TGATAGTTTACTTTCACTTGAAAAATGGGC 1014
|| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 962 AAGGCATCAATGCAATCAAAAGGAGAT-GCTGATAGTTTACTTTCACTTGAAAAATGGGC 1020
Query 1015 TAAGATTATAAAGGGTATAAGGGGGTTCAAGCCGGTCTTTGTGATTCCACATGAGAAAGA 1074
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 TAAGATTATAAAGGGTGTAAGGGGATTCAAGCCGGTCTTTGTGATTCCACATGAGAAAGA 1080
Query 1075 GAGAGAAAACGTGGAAGAAATTGTGGGTGATGATACATCTATAGTGTTCATAACAACACC 1134
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 AAGAGAAAACGTTGAAGATTTTGTGGGTGATGATACATCTATAGTGTTCATCACAACACC 1140
Query 1135 AGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTTATCGCTACAAACACAGCTGC 1194
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1141 AGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTCATCGCAACAAACACAGCTGC 1200
Query 1195 GATTCAACTAGCTAATGCGCGAGACAAACCCA-GTATTGGGTTGTTCTCTTCAGAAGAGA 1253
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1201 GATTCAACTAGCTAATGCGCGAGACAAACC-ATGTATTGGGTTGTTCTCTTCAGAAGAGA 1259
Query 1254 AAGGGAAGCTCTTTGTACCATACGCAGAAGAGAAAAGTAACTGTGTAATTATTGCTTCGA 1313
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1260 AAGGGAAGCTCTTTGTACCGTATGCAGAAGAGAAGAGTAACTGTGTAATTATTGCTTCGA 1319
Query 1314 AGACTGGAAAACTAGCAGATATCGACATTGGAACTGTTAAAAATGCAATGCAGATCTTTG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 AGACTGGAAAACTAGCAGATATCGACATTGGAACTGTTAAAAATGCAATGCAGGTCTTTG 1379
Query 1374 AAGGATCATTGGCTCTCGTGTAGATAAACCTAA-AGTTTCTGAAACACGTT--ATATATA 1430
||||||||||||||||||||||||||| | | | ||||||||||||| ||| |||||||
Sbjct 1380 AAGGATCATTGGCTCTCGTGTAGATAA-CTTTACAGTTTCTGAAACAAGTTCTATATATA 1438
Query 1431 GAGCATTTATGTGTATAAATCAATTATATAGT-TCTGTTATTCTGATGTTGGCCTCTGAT 1489
|||||||||||||||||||||| |||| |||| |||||| ||||||||||||||| ||
Sbjct 1439 GAGCATTTATGTGTATAAATCAGTTATGTAGTCTCTGTT---CTGATGTTGGCCTCTCAT 1495
Query 1490 CAAGAATTGGATTATTCAGCATCAAAATCAGGTTCCGGGGGCTTTTGCAGATTCATCAAG 1549
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1496 CAAGAATTGGATTATTCAGCATCAAAATCAGGTTCCGGAGGCTTTTGCAGATTTATCAAG 1555
Query 1550 CTCTTTGAACT 1560
||||||||||
Sbjct 1556 GTCTTTGAACT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5