BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471799

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16000.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   590    5e-168


> AT1G16000.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G80890.1); 
Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5494533-5495359 
FORWARD LENGTH=514
Length=514

 Score =  590 bits (319),  Expect = 5e-168
 Identities = 426/473 (90%), Gaps = 26/473 (5%)
 Strand=Plus/Plus

Query  1    AATGGGAAATGAGACGAAGACCAACAACGGTGGTGCTGCAAGTATGGCCGGAGGCGGAGG  60
            |||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||
Sbjct  43   AATGGGAAATGAGACGAAGA-C--CAACGGTGGTCCTGCAAGTATGGCCGGAGGCGGAGG  99

Query  61   ATTCAGAGCTAAATTGGAGCATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTTGG  120
            ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  100  ATTCAGAGCTAAAATGGAACATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTCGG  159

Query  121  GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  160  GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCAAA  219

Query  181  GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCCCGCCTCTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  220  GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCACGCCTCTC  279

Query  241  ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTCAAG--T--A--C-TT-GCACACTG--A  290
            |||||||||||||||||||||||||||||||| |||  |  |  | || ||||||||  |
Sbjct  280  ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTGAAGGATTGAGTCATTTGCACACTGTTA  339

Query  291  T-----ACTCATTTACCCACACGAGTTTAAACTTAGTAAAAAGAGTCTGAAG-CTTTGT-  343
            |     |||||||| ||||||| |||| ||||||||| ||||   ||||| | |||| | 
Sbjct  340  TCTCGTACTCATTTTCCCACACAAGTTAAAACTTAGTCAAAA---TCTGA-GTCTTTTTT  395

Query  344  G-G-TTTAGATTCAAGCTTGTTCTTATTTTGATGCACCATGTTTGGTTATCTGTGTTTTA  401
            | | |||||||||||  |  |||| ||||| |||||||||||||||||||| || |||||
Sbjct  396  GTGATTTAGATTCAAAATCATTCTCATTTTCATGCACCATGTTTGGTTATCCGTTTTTTA  455

Query  402  ATAAAAAGATAAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA  454
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  456  ATAAAAAGATCAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5