BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471800
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16010.2 | Symbols: MGT2, MRS2-1 | magnesium transporter 2 |... 2460 0.0
AT1G80900.1 | Symbols: ATMGT1, MGT1, MRS2-10 | magnesium transp... 1399 0.0
> AT1G16010.2 | Symbols: MGT2, MRS2-1 | magnesium transporter 2
| chr1:5495373-5497720 REVERSE LENGTH=1833
Length=1833
Score = 2460 bits (1332), Expect = 0.0
Identities = 1491/1565 (95%), Gaps = 21/1565 (1%)
Strand=Plus/Plus
Query 181 CAGCTTTTTGATCCCGTGGCTGGTTGGATATTACGGCGTTTGTAGCTCTGGTATGGCTTT 240
||||| |||||||||||||||||| |||||||||||||||||||||||| | | | |
Sbjct 281 CAGCTCTTTGATCCCGTGGCTGGTAGGATATTACGGCGTTTGTAGCTCT-G--T--CGTC 335
Query 241 GTGTATAGAGTTAGAACGACGAAATCAGCCTTGATTTATTAACTGTTATTTGGCATTCCG 300
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct 336 GTGGATAGAGTTAGAACGACGAAATCAGCCTTGGTTTCCTAACTGTTATTTGGCATTTCA 395
Query 301 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 455
Query 361 CTTCAGCTATGAACCTCAGAGATGCTGCTGTCACTCGGCCTTCTGCCTCTGGAAGAGCAC 420
|||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||
Sbjct 456 CTTCAGCTATGAACCTCAGAGATGCTTCTGTGACTCGGCCTTCTGCTTCTGGAAGACCAC 515
Query 421 CCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCCTACGGTCTTGGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 516 CCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCCTACGCTCTTGGA 575
Query 481 TTCGTGTTGATACTTCTGGCAATACTCAGGTCATGGAGGTCGACAAGTTCACTATGATGC 540
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 576 TTCGTGTTGATACTTCTGGTAATACTCAGGTCATGGAGGTTGACAAGTTCACTATGATGC 635
Query 541 GTAGATGTGACTTGCCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTTGTGTATCCCT 600
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 636 GTAGGTGTGACTTACCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTCGTGTATCCCT 695
Query 601 CTACTATCCTCGGCCGAGAAAAGGCTATTGTTGTGAACTTAGAGCAAATCCGTTGTATTA 660
|||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 696 CTACTATCCTAGGCCGAGAGAAGGCTATTGTTGTCAACTTAGAGCAGATCCGTTGTATTA 755
Query 661 TTACTGCAGATGAAGTTCTGCTCCTGAATTCCCTTGACAACTACGTGCTGCGGTATGTTG 720
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 756 TTACTGCAGACGAAGTTCTGCTTCTGAATTCCCTTGACAACTACGTGCTGCGCTATGTTG 815
Query 721 TTGAGTTGCAGCAGAGACTAAAGACTAGTAGTGTAGGTGAGATGTGGCAGCAGGAAAATG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTGAGTTGCAGCAGAGACTAAAGACTAGTAGTGTAGGTGAGATGTGGCAGCAGGAAAATT 875
Query 781 CCCAGTTGAGTAGAAGGAGGAGCAGGAGTTTTGACAATGCTTTTGAGAATTCATCCCCTG 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CCCAGTTGAGTAGGAGGAGGAGCAGGAGTTTTGACAATGCTTTTGAGAATTCATCCCCTG 935
Query 841 ATTATTTACCTTTTGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTACGTTTC 900
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATTATTTACCTTTCGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTACGTTTC 995
Query 901 TCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGCTTACCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGCTTACCT 1055
Query 961 CAAAGATCAGTACACTAAACTTGGAGCGTGTGCGTAGACTGAAGAGCAGGCTGGTAGCAC 1020
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1056 CAAAGATCAGTACACTAAACTTGGAGCGTGTGCGTAGACTAAAGAGCAGGCTTGTAGCAC 1115
Query 1021 TGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAGCAGCTAATGGATGATGATGGAG 1080
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1116 TGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATCGAGCAGCTAATGGATGATGATGGAG 1175
Query 1081 ATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTCTGTACGGTG 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1176 ATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTATGTACGGTG 1235
Query 1141 ACCAATCCTTGTTGGGTTACAGGTCAAATGATGGTCTATCTGTTTCTGCACCAGTCTCTC 1200
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1236 ACCAGTCCTTATTGGGTTACAGGTCAAATGATGGTCTATCTGTTTCTGCACCGGTGTCTC 1295
Query 1201 CTGTTTCTTCTCCTCCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTGCGAGGAGTC 1260
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CTGTTTCTTCTCCACCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTGCGAGGAGTC 1355
Query 1261 GGCATGACAGTGCAAGGAGTTCGGAAGGTGTAACAGAGAATATAGAAGAGCTAGAGATGT 1320
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1356 GGCATGACAGTGCAAGGAGTTCTGAAGGTG---CAGAGAATATAGAAGAGCTAGAGATGT 1412
Query 1321 TGCTGGAAGCTTACTTTGTCGTCATTGATAGCACTCTAAACAAGTTGACATCGTTAAAGG 1380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1413 TGCTGGAAGCTTACTTTGTCGTCATTGATAGTACTCTAAACAAGTTGACATCGTTAAAGG 1472
Query 1381 AGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGCGGAATCAGT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGCGGAATCAGC 1532
Query 1441 TGATCCAATTCGAGTTGCTTCTCACGACTGCAAC-TTTCGTTGTAGCCATATTTGGGGTC 1499
||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1533 TGATCCAGTTCGAGTTGCTTCTGACGACTGCAACGTTT-GTTGTAGCCATATTTGGGGTC 1591
Query 1500 GTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTCAACCAGCCAGGAGCATTC 1559
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1592 GTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTCAATCAGCCAGGTGCATTC 1651
Query 1560 AGATGGGTACTTATAATTACTGGAGTATGTGGCTTTGTTATATTTTCGGCATTCGTCTGG 1619
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1652 AGATGGGTACTCATAATTACTGGAGTATGTGGCTTTGTGATATTTTCGGCATTCGTCTGG 1711
Query 1620 TTCTTCAAGTACAGAAGACTCATGCCTCTATAAGA-G-GA--CATGAATGTGCCCCCCAC 1675
||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct 1712 TTCTTCAAGTACAGAAGACTCATGCCTCTATAAGAAGAGAGACATGAATGTGCTCCCCAG 1771
Query 1676 CCCACAAAGTAGACATCAACTTCTATTGTTGTGTTGCTTACA--TACTAATGATTTGTTT 1733
| || |||||||||||||| ||||||| ||||||||||| || |||||||||||||
Sbjct 1772 ---A-AA-GTAGACATCAACTTATATTGTTATGTTGCTTACAGATATTAATGATTTGTTT 1826
Query 1734 CCTTT 1738
|||||
Sbjct 1827 CCTTT 1831
Score = 235 bits (127), Expect = 1e-60
Identities = 171/190 (90%), Gaps = 12/190 (6%)
Strand=Plus/Plus
Query 1 TCCATCGCTCGTTTGTTTCTTCTTCAGCCATATCGGAAAAAACGATATACGACAAGCCAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 4 TCCATCGCTCGTTTGTTTCTTCTTCAGCCATATCGGAAAAAACGATATCCGACGAGCCAT 63
Query 61 CCGGTGTTTGTTCCGACAAGCTTCGAATCGATCTGTGATAGG-TTTTTCCTTTTTCCGCC 119
||||||||||||||| ||||| ||| |||||||||| |||| |||||| ||||||||||
Sbjct 64 TCGGTGTTTGTTCCGAGAAGCTCCGA-TCGATCTGTGTTAGGGTTTTTC-TTTTTCCGCC 121
Query 120 TTATGAATCTCT-T-T-----T--CATTGGATTCAGTTTAACTCGAGTGATGAAACCAAT 170
|||||||||||| | | | |||| |||||||||||||||||||||||||||||||
Sbjct 122 TTATGAATCTCTCTATCGCGGTTTCATTAGATTCAGTTTAACTCGAGTGATGAAACCAAT 181
Query 171 CTCCGTGCTA 180
||||||||||
Sbjct 182 CTCCGTGCTA 191
> AT1G80900.1 | Symbols: ATMGT1, MGT1, MRS2-10 | magnesium transporter
1 | chr1:30398150-30400340 REVERSE LENGTH=1614
Length=1614
Score = 1399 bits (757), Expect = 0.0
Identities = 1169/1368 (85%), Gaps = 27/1368 (2%)
Strand=Plus/Plus
Query 301 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 360
||||||| | || |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 124 GTATCTGGAGATTGGCAACAATGTCTGAACTCAAAGAGCGTTTGCTTCCTCCAAGACCTG 183
Query 361 CTTCAGCTATGAACCTCAGAGATGCTGCTGTCACTCGGCCTTCTGCC-TCTGGAAGAGC- 418
|||| ||||| ||||| |||| || ||| | | |||| |||||| || || || ||| |
Sbjct 184 CTTCGGCTATTAACCTTAGAGGTGATGCAGGCTCTCGTCCTTCT-CCTTCAGGGAGA-CA 241
Query 419 ACCCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCC-TACGGTCTT 477
||| || |||||||||||||| |||||||| ||||||||||||||||||| || ||| |
Sbjct 242 ACCACTCCTTGGAGTTGATGTTTTGGGTCTCAAGAAGCGTGGACAAGGCCTTA-AGTCGT 300
Query 478 GGATTCGTGTTGATACTTCTGGCAATACTCAGGTCATGGAGGTCGACAAGTTCACTATGA 537
||||||||||||||||||||| |||| |||||||||| ||||| || |||||||||||||
Sbjct 301 GGATTCGTGTTGATACTTCTGCCAATTCTCAGGTCATTGAGGTTGATAAGTTCACTATGA 360
Query 538 TGCGTAGATGTGACTTGCCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTTGTGTATC 597
||||||||||||| || || || || |||||||||||||||||||| || ||||||||||
Sbjct 361 TGCGTAGATGTGATTTACCAGCACGGGATTTAAGGCTGCTTGATCCTTTGTTTGTGTATC 420
Query 598 CCTCTACTATCCTCGGCCGAGAAAAGGCTATTGTTGTGAACTTAGAGCAAATCCGTTGTA 657
| || ||||| || || |||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 421 CGTCAACTATTCTTGGTAGAGAGAAGGCTATTGTTGTTAACTTAGAGCAGATCCGTTGTA 480
Query 658 TTATTACTGCAGATGAAGTTCTGCTCCTGAATTCCCTTGACAACTACGTGCTGCGGTATG 717
|||||||||| ||||| ||| ||||| ||||||||||||||||||| ||||| || ||||
Sbjct 481 TTATTACTGCGGATGAGGTTTTGCTCTTGAATTCCCTTGACAACTATGTGCTTCGCTATG 540
Query 718 TTGTTGAGTTGCAGCAGAGACTAAAGACTAGTAGTG-TAGGTGAGATGTGGCAGCAGGAA 776
|||||||| ||||||||||||||||| | ||| || || |||| | ||| | |||||
Sbjct 541 TTGTTGAGCTGCAGCAGAGACTAAAGGCAAGTTCTGTTA-CTGAGGTTTGGAATCAGGAC 599
Query 777 AATGC-CCAGTTGAGTAGAAGGAGGAGCAGGAGTTTTGACAATGCT-TTTGAGAATTCAT 834
| | | | | ||||| || |||||||| |||||||| ||||||| | || |||| ||||
Sbjct 600 AGT-CTCGAATTGAGCAGGAGGAGGAGTAGGAGTTTAGACAATG-TGCTTCAGAACTCAT 657
Query 835 CCCCTGATTATTTACCTTTTGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTA 894
||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||
Sbjct 658 CCCCTGATTATTTACCTTTCGAGTTCAGGGCTCTTGAAGTTGCACTTGAAGCTGCTTGTA 717
Query 895 CGTTTCTCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGC 954
| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 718 CCTTCCTTGATTCCCAGGCTTCAGAGTTAGAGATTGAGGCATACCCATTATTGGATGAGC 777
Query 955 TTACCTCAAAGATCAGTACACTAAACTTGGAGCGTG-TGCGTAGACTGAAGAGCAGGCTG 1013
||||||||||||||||||| |||||||||||||||| | |||||||| |||||||| ||
Sbjct 778 TTACCTCAAAGATCAGTACTCTAAACTTGGAGCGTGCT-CGTAGACTAAAGAGCAGACTT 836
Query 1014 GTAGCACTGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAGCAGCTAATGGATGAT 1073
|||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 837 GTAGCATTGACGAGACGAGTTCAGAAGGTTCGGGATGAGATTGAACAGCTAATGGACGAT 896
Query 1074 GATGGAGATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTCTG 1133
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 897 GATGGGGATATGGCAGAAATGTATCTAACAGAGAAGAAGAAGAGAATGGAAGGATCTTTA 956
Query 1134 TACGGTGACCAATCCTTGT-TGGGTTA-CAGGTCAAATGATGGTCTATCTGTTTCTGCAC 1191
|| ||||| ||||| || || ||| | | |||||||| || | ||| | ||||| |
Sbjct 957 TATGGTGATCAATCTTTACCTGT-TTATC-GAACAAATGATTGTTTTTCTCTGTCTGCGC 1014
Query 1192 CAGTCTCTCCTGTTTCTTCTCCTCCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTG 1251
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1015 CAGTTTCTCCTGTTTCTTCTCCTCCTGAGTCCCGTAGACTTGAGAAAAGCTTGAGCATTG 1074
Query 1252 CGAGGAGTCGGCATGACAGTGCAAGGAGTTCGGAAGGTGTAACAGAGAATATAGAAGAGC 1311
||||| |||||||||||||| ||||| || |||| | ||| ||||||||||| ||||
Sbjct 1075 TAAGGAGCCGGCATGACAGTGCTAGGAGCTCAGAAGACGCAACCGAGAATATAGAGGAGC 1134
Query 1312 TAGAGATGTTGCTGGAAGCTTACTTTGTCGTCATTGATAGCACTCTAAACAAGTTGACAT 1371
||||||||||||||||||| |||||||| |||||||| |||||||| |||||| | || |
Sbjct 1135 TAGAGATGTTGCTGGAAGCATACTTTGTTGTCATTGACAGCACTCTCAACAAGCTAACCT 1194
Query 1372 CGTTAAAGGAGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGC 1431
|||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||| || |
Sbjct 1195 CGTTAAAGGAGTACATCGATGATACCGAAGATTTCATCAACATTCAATTGGATAACGTAC 1254
Query 1432 GGAATCAGTTGATCCAATTCGAGTTGCTTCTCACGACTGCAACTTTCGTTGTAGCCATAT 1491
|||||||| |||||||||||||| |||| || || ||||| || |||||||||||||| |
Sbjct 1255 GGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCT 1314
Query 1492 TTGGGGTCGTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTC-AACCAGCCA 1550
| ||||| || || ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1315 TCGGGGTTGTAGCCGGGATCTTTGGGATGAATTTTGAGATAGACTTCTTTGAAA-AGCCT 1373
Query 1551 GGAGCATTCAGATGGGTACTTATA-ATTACTGGAGTATGTGGCTTTGTTATATTTTCGGC 1609
|| || |||| |||||| ||| ||||||||||| |||||| ||||| |||||| |||
Sbjct 1374 GGTGCTTTCAAATGGGTT-TTAGCCATTACTGGAGTGTGTGGCCTTGTTGTATTTTTGGC 1432
Query 1610 ATTCGTCTGGTTCTTCAA--GTACAGAAGACTCATGCCTCTAT-AAGA 1654
|||| |||||| || ||| ||| |||||||||||||||| | ||||
Sbjct 1433 ATTCCTCTGGTACTACAAACGTA--GAAGACTCATGCCTCTGTGAAGA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5