BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471803
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16020.1 | Symbols: | Protein of unknown function (DUF1712)... 2992 0.0
> AT1G16020.1 | Symbols: | Protein of unknown function (DUF1712)
| chr1:5498165-5501358 FORWARD LENGTH=2105
Length=2105
Score = 2992 bits (1620), Expect = 0.0
Identities = 1837/1938 (95%), Gaps = 29/1938 (1%)
Strand=Plus/Plus
Query 1 CACAAAATGTCACGTAATTCTTCTTCTACTGATTTCAGCTCAATCGGTCAAATTCGAGTT 60
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 10 CACAAAATGTCGCGTAA---TTCTTCTACTGATTTCAGCTCAATCGCTCAAATTCGAGTT 66
Query 61 TGAGTTTAGAAATT--A----A---------TC-TG------TCTCCGATCGGTGAACTA 98
|| ||||||||||| | | || || ||||||||||||||||||
Sbjct 67 TGCGTTTAGAAATTGAAGTTGACTCTTCTGTTCTTGAATCTATCTCCGATCGGTGAACTA 126
Query 99 TCTCGCAGTACCAGGTGATTGATCACTCCTTGGACATTGCTCTTTCAATTCGTTCTCAAG 158
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 127 TCTCGCAGTACCAGGAGATTGATCACTCCTTCGACATTGCTCTTTGAATTCGTCCTCAAG 186
Query 159 GGTTTTAATGAGATCGTAGAAGCTTCCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 218
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 187 GGTATTAATGAGCTCGTAGAAGCTACCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 246
Query 219 CCTTCGACTTTGCGCATTTGATTTGAGGAGGGGCCAAACTGAAGGACAAGAGTTAGACAA 278
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 247 CCTTCGACTTTGCATGTTTGATTTGAGGAGAGGTCAAACTGAAGGACAAGAGTTAGAGAA 306
Query 279 GATTTTGTTCTTTTACCCTGCAGAATTAGACTTATCCACGCAGTTATCAGTGATCGGGCT 338
|||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 307 AATTTTGTTCTTTTATCCTGCCGATTTAGACTTCTCGACGCAGTTATCAGTGATCGGGCT 366
Query 339 CAGTGAAGGTCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCAGCTTGTGAAGTAAT 398
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 367 CAGTGAAGGGCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGAT 426
Query 399 AGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCGGATATCTGGATGGTTAT 458
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 CGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTAT 486
Query 459 GGTTGTGGAGAAAAATAAGGAGACAGGAGCAATATGGAGGATTGATGCATTAAGGAGGGT 518
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 487 GGTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTAAGGAGGGT 546
Query 519 GCTTAAAGAAGTGCACTCACTCTTTGTTATGTTTCACGGGTCAATTAGGGCATTAATCGA 578
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 547 GCTTAAAGAAGTGCACTCACTCTTTGTGATGTTTCACGGGTCAATTAGGGCATTAATCGA 606
Query 579 AAAAGAACCAACAGGAGGGCTTACCCGATCACTGTTGTACCCGTTCATCACTGATTATTT 638
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 607 AAAAGAACCAACAGGAGGGCTTACCCGATCACTATTGTACCCGTTCATCACAGATTATTT 666
Query 639 AAGCACATTTCAAAAATGGTCTCTCTCGGAAGACTGCTGCTGTGAtttttttGTTGGGAA 698
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 667 AAGCACATTTCAAATATGGTCTCTCTCGGAAGACTGCTGCTGTGAATTTTTTGTTGGGAA 726
Query 699 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 786
Query 759 TACTTTAGCAAGGGACATTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 818
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TACTTTAGCAAGGGATACTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 846
Query 819 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTGCTGGTTTCAACAAC 878
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 847 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTTTTGGTTTCAACAAC 906
Query 879 CCTCTCAGCTGATGATACCGTCGACTTATTTACATTTGCTGTAATGAGGTTGACCTCAAA 938
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 907 CCTCTCAGCTGATGATACCGTCGACTTGTTTACATTTGCGGTAATGAGGTTGACCTCAAA 966
Query 939 AGCTTTATCCTCTGACGCAAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 998
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGCTTTATCCTCTGATACGAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 1026
Query 999 AATCTCTTCTAGATCTACTTTGGCACCCATTGGCTCAATTGATTCCCTACACTCAAGAAA 1058
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1027 AATCTCTTCTAGATCTAATCTGGCACCCGTTGGCTCAATTGATTCCCTACACTCAAGAAA 1086
Query 1059 CGGTAATGACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1118
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CGGTAATAACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1146
Query 1119 AGATGGGTTTTTAATAACCGATATTTGGGGTCTAGAGACTGGCGGTTCACCTGATTCTGC 1178
|||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1147 AGATGGGTTTCTAATAACCGATATTTGGGGTCTTGAGACTGGCGGCTCCCCTGATTCTGC 1206
Query 1179 CATCCCTACAATCTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCTTATCAGCA 1238
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1207 CATCCCTACAATTTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCCTATCAGCA 1266
Query 1239 TAAAAGTCTCACCTTACTTCTTCTCATGCCTACAAATGCCATTGTCAATGGTGATTTAAG 1298
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1267 TAAAAGTCTCACCTTACTTCTTCTGATGCCTACAAATGCCATTGTCAATGGAGATTTAAG 1326
Query 1299 CGTCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATCGA 1358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1327 CATCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATTGA 1386
Query 1359 AGAGAAGATTTCAAGAGGGTGGGGCGGTGAGAATACTTACCATATTAAGGGTTACCGTTA 1418
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1387 AGAGAATATTTCAAGAGGGTGGGGCGGTGAGAATGCTTACCATATTAAGGGTTACCGTTA 1446
Query 1419 CTTAGTAGTTGATAGTGACATGGAAGTATCCAGAGCTTCTCCTTCAGGAAAAGTAACAAC 1478
|||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1447 CTTAGTAGTTGATAATGACACGAAAGTATCCAGATCTTCTCCTTCAGGAAAAGTAACAAC 1506
Query 1479 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTTAGAAAA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1507 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTCAGAAAA 1566
Query 1539 AAGTCGTGCGAAAAGG-CAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1597
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AAGCCGTGC-AAAAGGACAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1625
Query 1598 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1685
Query 1658 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1745
Query 1718 GAGCGTTCTTGATGGACTAAGTTTTAGTGTTCTTTCTTCTGGTTTTGGGAAGAGGTTTCT 1777
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1746 GAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCT 1805
Query 1778 TCTAGTTTCAAGTACAAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTATTAGCC 1837
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1806 TCTAGTTTCAAGTACGAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTCTCAGCC 1865
Query 1838 ATTAATTTTGTTGTG-G-GAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1895
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 ATTAATTTTGTTTTGTGAGAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1925
Query 1896 TAGATATGTAACAATGAt 1913
||||||||||||||||||
Sbjct 1926 TAGATATGTAACAATGAT 1943
Score = 154 bits (83), Expect = 3e-36
Identities = 105/115 (91%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1914 ttttttGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATTCTTGGTTTGGTTAGATAT 1973
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1974 TTTTTTGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATCCTTGGTTTGGTTGGATAT 2033
Query 1974 AGTCACTCCTGATTACTAGTAGTACTATACAAGTGTTATTCCGTATCCGTTCCAA 2028
| |||||||||||||||||| |||||||||||||| || ||||||||| |||
Sbjct 2034 ACCCACTCCTGATTACTAGTA---CTATACAAGTGTTACTCTGTATCCGTTTCAA 2085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5