BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471806
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domai... 1720 0.0
AT1G79700.2 | Symbols: | Integrase-type DNA-binding superfamil... 531 8e-150
> AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domain
protein | chr1:5508507-5511735 FORWARD LENGTH=1220
Length=1220
Score = 1720 bits (931), Expect = 0.0
Identities = 1101/1181 (93%), Gaps = 20/1181 (2%)
Strand=Plus/Plus
Query 29 TTCCTCTTC-TTTATGTACATCGCCGTCGAAGTTTCTCCGGTGATGGAAGAGATCACACG 87
||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 44 TTCCTCTTCTTTTATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACG 103
Query 88 GAAGAGCAAGAAAACATCCGTTGAGAATGAAACCGGCGATGATCAGTCAGCAACATCAGT 147
| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GCAGAGCAAAAAAACTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAACATCAGT 163
Query 148 AGTCGTTAAAGCTAAACGCAAACGCCGATCACAACCACGAGACGCTCCTCCACAACGCAG 207
|||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 164 AGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAG 223
Query 208 CTCCGTCCATAGAGGCGTCACCAGGCATCGATGGACTGGAAGGTACGAAGCACATTTATG 267
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 224 CTCCGTCCATAGAGGCGTCACAAGGCATCGATGGACTGGAAGGTACGAAGCACATTTGTG 283
Query 268 GGATAAGAATAGTTGGAACGAGACTCAGAGCAAGAAAGGAAGAC------A---AGGGGC 318
||||||||||||||||||||| ||||||| |||||||||||||| | ||||||
Sbjct 284 GGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGC 343
Query 319 ATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 ATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGG 403
Query 379 ACGAGACACCATCTTGAATTTCCCTTTGTGTAACTATGGAGAAGACATCAAGGAAATGGA 438
|||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||
Sbjct 404 ACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAGAAATGGA 463
Query 439 AAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGGAAAAGTAGTGGGTTCTCACG 498
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 464 AAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACG 523
Query 499 TGGTGTATCAAAATATAGAGGCGTTGCAAAGCATCACCATAATGGGAGATGGGAAGCTCG 558
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 524 AGGTGTATCAAAATACAGAGGCGTTGCAAAGCATCACCACAATGGGAGATGGGAAGCTCG 583
Query 559 AATTGGAAGAGTCTTTGGCAATAAATATTTATACCTTGGAACTTACGCTACACAAGAAGA 618
||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 584 AATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGA 643
Query 619 AGCGGCTATAGCGTATGATATCGCAGCAATCGAGTACCGTGGACTTAACGCCGTTACTAA 678
||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 644 AGCAGCTATAGCGTACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAA 703
Query 679 CTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCCATCGACGCCGCTAA 738
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 704 CTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATACCGCGAA 763
Query 739 TAATCTCCTGGAGAGTCCGCATTCTGATCCCAGCCCATTTATAAACCCTA-CTCACGAGT 797
||||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||
Sbjct 764 TAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAAC-CACGAGT 822
Query 798 CTGATTTATCACAGAGTCAATCTTCATCAGACGATAACGATGATCGGAAAACAAAGCTCT 857
|||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 823 CTGACTTATCACAGAGTCAATCTTCGTCAGAGGACAACGATGATCGGAAAACAAAGCTCT 882
Query 858 TAAAGTCGTCACCTTTAAATG-CAGAGGAAGTAATCGGACCATCGACGCCACCGGAGATT 916
| ||||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||
Sbjct 883 TGAAGTCGTCACCTTTAG-TGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATT 941
Query 917 GCTCCGCCTCGCCGGAGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCC 976
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCTCCGCCTCGTCGGAGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCC 1001
Query 977 GGCAAGCTAACGACGGAGGAAGATGACGTTATCTTCGGTGATTTAGATTCTTTCCTTACG 1036
|||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1002 GGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCCTTACG 1061
Query 1037 CCTGATTTCTACAGCGAGTTAAATGATTGCTAAAGTGTTCTTCTGATTTGATAAGttttg 1096
||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 1062 CCTGATTTCTACAGCGAGTTAAATGATTGCTAAAGTGTTGTTCT--TCTGATAAGTTTTG 1119
Query 1097 ttttt-agttttttGGAATCTCGGTTGTGAAAATCAGCATTGACACATATCGGTTATTCT 1155
||||| |||| || ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1120 TTTTTTAGTTGTTCAGAATCTCGGTTGTGAAAATCAACATTGACACAT--CGATTATTCT 1177
Query 1156 TTCTTGTGACAATCTTATTATAATAAAGTTTGAATCTTTTT 1196
|||||||||||||||||| ||||||||||||||||||||||
Sbjct 1178 TTCTTGTGACAATCTTAT-ATAATAAAGTTTGAATCTTTTT 1217
> AT1G79700.2 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:29990336-29993724 REVERSE LENGTH=1112
Length=1112
Score = 531 bits (287), Expect = 8e-150
Identities = 454/533 (85%), Gaps = 18/533 (3%)
Strand=Plus/Plus
Query 185 CGAGACGCTCCTCCACAACGCAGCT-CCGTCCATAGAGGCGTCACCAGGCATCGATGGAC 243
||| ||||||||| |||||||||| || | | ||||||||||| |||||| |||||||
Sbjct 193 CGAAACGCTCCTCTTCAACGCAGCTCCCCT-TACAGAGGCGTCACAAGGCATAGATGGAC 251
Query 244 TGGAAGGTACGAAGCACATTTATGGGATAAGAATAGTTGGAACGAGACTCAGAGCAAGAA 303
||| || |||||||| ||||| ||||||||||| || |||||||| || |||| ||||||
Sbjct 252 TGGGAGATACGAAGCGCATTTGTGGGATAAGAACAGCTGGAACGATACACAGACCAAGAA 311
Query 304 A-G--G--AAG---A-CAAGGGGCATATGACGAGGAAGATGCAGCAGCACGTGCCTACGA 354
| | | ||| | | |||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 312 AGGACGTCAAGTTTATCTAGGGGCTTACGACGAAGAAGAAGCAGCAGCACGTGCCTACGA 371
Query 355 CTTAGCAGCATTGAAATATTGGGGACGAGACAC-CATCTTGAATTTCCCTTTGT-GTAAC 412
||||||||||||||| || |||||||||||||| | ||||||| ||||||||| | |
Sbjct 372 CTTAGCAGCATTGAAGTACTGGGGACGAGACACAC-TCTTGAACTTCCCTTTGCCG-AGT 429
Query 413 TATGGA-GAAGACATCAAGGAAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTT 471
|||| | |||||| |||| ||||||||| |||| || |||||||||||||||||||| ||
Sbjct 430 TATG-ACGAAGACGTCAAAGAAATGGAAGGCCAATCCAAGGAAGAGTATATTGGATCATT 488
Query 472 GAGAAGGAAAAGTAGTGGGTTCTCACGTGGTGTATCAAAATATAGAGGCGTTGCAAAGCA 531
|||||| ||||||||||| || || || |||||||||||||| ||||||||||||| |||
Sbjct 489 GAGAAGAAAAAGTAGTGGATTTTCTCGCGGTGTATCAAAATACAGAGGCGTTGCAAGGCA 548
Query 532 TCACCATAATGGGAGATGGGAAGCTCGAATTGGAAGAGTCTTTGGCAATAAATATTTATA 591
||||||||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||
Sbjct 549 TCACCATAATGGGAGATGGGAAGCTAGAATTGGAAGGGTGTTTGGTAATAAATATCTATA 608
Query 592 CCTTGGAACTTACGCTACACAAGAAGAAGCGGCTATAGCGTATGATATCGCAGCAATCGA 651
|||||||| ||||| || ||||||||||| || || || || || ||||| ||||| ||
Sbjct 609 TCTTGGAACATACGCCACGCAAGAAGAAGCAGCAATCGCCTACGACATCGCGGCAATAGA 668
Query 652 GTACCGTGGACTTAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAAC 704
|||||||||||||||||||||||| || |||||| ||||||||||||| ||||
Sbjct 669 GTACCGTGGACTTAACGCCGTTACCAATTTCGACGTCAGCCGTTATCT-AAAC 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5