BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471808
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16070.2 | Symbols: AtTLP8, TLP8 | tubby like protein 8 | ch... 2019 0.0
> AT1G16070.2 | Symbols: AtTLP8, TLP8 | tubby like protein 8 |
chr1:5511874-5513896 REVERSE LENGTH=1339
Length=1339
Score = 2019 bits (1093), Expect = 0.0
Identities = 1264/1344 (94%), Gaps = 21/1344 (2%)
Strand=Plus/Plus
Query 1 TGTCAAACACCTGTTTCTAGATTTATGTCTTCAAATTCTATAAAGAATATAAACTTAGCT 60
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1 TGTCAAACACCTGTTTCTAGATTCATGTCTTCAAAATCTATAAAG-ATATAAACTTAGCT 59
Query 61 CCCAGAAAGTTCT--A----A-ACTTGAAAGCAA--C--CCAGAAAGGGaaaaaaaaaaC 109
||||||||||||| | | |||||||||||| | |||||||||| |||||||||
Sbjct 60 CCCAGAAAGTTCTAAACTTGATACTTGAAAGCAATCCATCCAGAAAGGG--AAAAAAAAC 117
Query 110 ATGGCTGGTTCCAGAAAAGAGAATGATTTGTTGGAGGAAAATAAGGAAAATGTGGACACA 169
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 118 ATGGCTGGTTCGAGAAAAGTGAATGATTTGTTGGAGGAAAATAAGGGAAATGTGGACACA 177
Query 170 GTCT-CAAGGTCTTTCTCCACAAAAAAGGTAGAGGATAAGGAGAATGTGTCGCCGGAAAA 228
| | || ||||||| ||||| |||||| ||||||||||||||||||||||||||| ||
Sbjct 178 AT-TACAGGGTCTTTATCCACTCAAAAGGGAGAGGATAAGGAGAATGTGTCGCCGGAGAA 236
Query 229 AGTATCTACCTCTGTGGAAACTCGGAAACAAGATCGAGCTTTGAAGTCTCAATCGATGAA 288
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 AGTCTCTACCTCTGTGGAAACTCGGAAACTAGATCGAGCTTTGAAGTCTCAATCGATGAA 296
Query 289 GGGTAACTCTGGCTTTCCCACGGAAGTTACAAATTTCAAGTCTTTCTCAACGGGTGGTCG 348
|||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 297 GGGTAACTCTGGGTTTCCAACGGAAGTTACAAATTTCAAATCTTTCTCAACTGGTGGTCG 356
Query 349 AACGGCTCTGAAGCAGACATCGCTGCAAGCGTGTATGCAGAAGAACAGTGAGGTTGATAA 408
||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 357 AACAGCTCTGAAGCAGTCATCACTGCAAGCGTGTATGCAGAAGAACAGTGAGGTTGATAA 416
Query 409 GGGTAGTTTCGGAATGAAAACTTGGACTAGTGTTGATTCAGAGCATTCGAGTTCGTTGAA 468
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GAGTAGTTTCGGAATGAAAACTTGGACTAGTGTTGATTCAGAGCATTCAAGTTCGTTGAA 476
Query 469 AGTGTGGGAGTTTTCGGATTCTGAAGCTGCTCCTGCTTCCTCTTGGTCTACTTTGCCCAA 528
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 AGTGTGGGAGTTTTCGGATTCTGAAGCTGCCCCTGCTTCCTCTTGGTCTACTTTGCCCAA 536
Query 529 CAGGGCTTTGTTGTGCAAGACACTACCTTTGGATGTGGGTAGATGCACTTGTCTGATTGT 588
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 CAGGGCTTTGTTGTGCAAGACACTACCTTTGGATGTGGGAAGATGCACTTGTCTGATTGT 596
Query 589 GAAAGAACAATCACCTGAAGGCTTAAGCGGCGGATCTCTATATTCACTTTATACACATGA 648
|||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 597 GAAAGAACAATCACCTGAAGGCTTGAGCCACGGATCTGTATATTCACTTTATACACATGA 656
Query 649 AGGTCGGGGGCGTAAAGACCGAAAGCTAGCTGTTGCTTTCCATAGGCGACGTAATAGGAA 708
||||||||||||||||||||| ||| |||| ||||||| |||||| ||||||||| ||||
Sbjct 657 AGGTCGGGGGCGTAAAGACCGGAAGTTAGCAGTTGCTTACCATAGCCGACGTAATGGGAA 716
Query 709 ATCCATATTTAGGGTGGCACAGAATGTTAAGGGACTATTGTGCAGTTCGGATGAAAGTTA 768
||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 717 ATCTATATTTAGGGTGGCACAGAATGTTAAGGGATTGCTGTGCAGTTCGGATGAAAGTTA 776
Query 769 TGTCGGTTCTATGACGGCTAATCTCTTGGGTTCCAAGTACTACATATGGGATAAGGGAGT 828
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 TGTCGGTTCCATGACGGCTAATCTCTTGGGTTCCAAGTACTACATATGGGACAAGGGAGT 836
Query 829 TCGAGTTGGTTCTGTAGGTAAAATGGTGAAGCCGCTTCTTTCCGTTGTAATATTCACACC 888
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 TCGAGTTGGTTCTGTAGGTAAAATGGTGAAGCCGCTTCTTTCGGTTGTAATATTCACACC 896
Query 889 CACCATAACAACTTGGACAGGGAGGTACAGAAGAATGAGAGCTTTGCTACCAAAGCAGCA 948
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 897 CACCATAACAACTTGGACAGGGAGCTACAGAAGAATGAGAACTTTGCTACCAAAGCAGCA 956
Query 949 GCCACTGCAGAAGAACAACAATAAGCAGGTTCAGCAAGCTAGTAAACTACCGCTTGATTG 1008
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 GCCAATGCAGAAAAACAACAATAAGCAGGTTCAACAAGCTAGTAAACTACCGCTTGATTG 1016
Query 1009 GCTTGAGAATAAGGAAAAAGTTCAGAAGCTATGCTCAAGGATACCACATTACAACAAAAT 1068
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCTTGAGAATAAGGAAAAAATTCAGAAGCTATGCTCAAGGATACCACATTACAACAAAAT 1076
Query 1069 CACCAAGCAGCATGAGTTAGACTTCAGAGACAGAGGAAGAACAGGACTGAGAATACAGAG 1128
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTCCAAGCAGCATGAGTTAGACTTCAGAGACAGAGGAAGAACAGGACTGAGAATACAGAG 1136
Query 1129 CTCGGTGAAGAACTTTCAGCTAACACTCACGGAG-A-A-TCCAAGGCAGACGATTCTTCA 1185
||||||||||||||||||||||||||||||| || | | |||||||||||| ||||||||
Sbjct 1137 CTCGGTGAAGAACTTTCAGCTAACACTCACGCAGGAGACTCCAAGGCAGACAATTCTTCA 1196
Query 1186 AATGGGAAGAGTGGACAAAGCAAGATATGTAATCGATTTCAGGTATCCATTCTCGGGCTA 1245
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1197 AATGGGGAGAGTTGACAAAGCAAGATATGTAATCGACTTCAGGTATCCATTCTCAGGCTA 1256
Query 1246 CCAAGCGTTCTGCATTTGCTTGGCTTCCATTGATTCCAAGCTTTGTTGTACTATTTGATC 1305
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1257 CCAAGCATTCTGCATTTGCTTGGCTTCTATTGATTCCAAGCTTTGTTGTACTGTTTGATC 1316
Query 1306 ATTA-TAAAATGGACGAGTTCAAT 1328
|||| |||| |||||||||||||
Sbjct 1317 ATTAATAAAC-GGACGAGTTCAAT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5