BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471811
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16090.1 | Symbols: WAKL7 | wall associated kinase-like 7 | ... 819 0.0
> AT1G16090.1 | Symbols: WAKL7 | wall associated kinase-like 7
| chr1:5516259-5517822 FORWARD LENGTH=1310
Length=1310
Score = 819 bits (443), Expect = 0.0
Identities = 596/666 (89%), Gaps = 25/666 (4%)
Strand=Plus/Plus
Query 101 CGATTCCATATCCCTTTGGAATTGGTAAAGATTGCTATCTCGACAACAACGAGTGGTATG 160
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 131 CGATTCCTTATCCCTTTGGAATTGGTAAAGATTGCTATCTCAACAACAATGAGTGGTATG 190
Query 161 AAGTTATCTGTAACCGAACGTCAGGAAACCCTGTGCCAATTCTTAATAGTATCAACAGAG 220
||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||
Sbjct 191 AAGTTATCTGTAACCGAACCTCAGGAAACCCTCTGCCAGTTCTTAAGAGTATCAACAGAG 250
Query 221 AACTGGTGAATATCTCTCTGCCGGACGACTCAAGCGAT-TCCTTTGGGCTAATCCGAATC 279
||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||
Sbjct 251 AACTGGTGAATATCTCTCTCCCGGACGACTCAAGCGATGTC-TTTGGGCTAACCCGAATC 309
Query 280 AAGAATCCGGTAACTTCATCT-GGCTGTTCCAATATGGAAGAACTCAGCTTGGTTTTGAA 338
||||||||||||||||| | | ||||||||||||||||||||| ||||||||| ||||||
Sbjct 310 AAGAATCCGGTAACTTCTT-TAGGCTGTTCCAATATGGAAGAAATCAGCTTGGCTTTGAA 368
Query 339 TGTGACCAGAAGCCCATTCTTCCTCACCGGCCATAATACTCTAGTAGCAGTTGGTTGTAA 398
||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct 369 TGTGACCGGGAGCCCATTCTTCCTCACCGGCCGTAATACTTTAGTAGCAGTTGGCTGTAA 428
Query 399 CAACAAGGCCTCGATGACGGATGTTAAGCAGCAGATAGGAGGATGCGAGTCTACCTGCGA 458
|||||| ||||||||||| |||| ||||| |||||| |||||||||||||||||||||||
Sbjct 429 CAACAATGCCTCGATGACTGATGATAAGCTGCAGATTGGAGGATGCGAGTCTACCTGCGA 488
Query 459 CCTTTGGTTTGGTCAGAGAGGGCAGAACACAAGCTGCAACGGCTACAGATGTTGCCAAGC 518
| | |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||
Sbjct 489 CGTGGGGTTTGGTCAGAGAGGACGGAACAGAAGCTGCAACGGCTATAGATGTTGCCAAGC 548
Query 519 GAAGATACCCTCTGACCCCTTGATGGTAACACAACGAAATCA-GCT-G-GA-TGCA-GAT 573
|||||||| |||||||| | || |||| | | |||| | | | || | | |||
Sbjct 549 GAAGATACTCTCTGACCG-TC--TGC-AACAGATTGGCATCAAGATAGAGAGT-CTTGAT 603
Query 574 GA-G-G-CATATTCTCCTTTAAATATAACCGAACCAGAGTTGTTTTACGATAAGGGATAT 630
|| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 GACGAGGCATATTCTCCTTTAAATATAACCGAACCAGCTTTGTTTTACGATAAGGGATAT 663
Query 631 GCAACAGTGGAGTTAGGTTGGTTCATAGATAGGTTACACAATATGTCCGTTGATACTGGG 690
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 664 GGAACGGTGGAGTTAGGTTGGTTCATAGATAGGTTACACAATATGTCCGTTG-TACTGGG 722
Query 691 GTTTGCTATTCAATTACCGAGGGTACACA-CGGTTGGAGTTACA-GT-AA-CTAT-GAAG 745
||||||||||||||||||||||||||| | |||||||||||||| | || |||| ||||
Sbjct 723 GTTTGCTATTCAATTACCGAGGGTACA-AGCGGTTGGAGTTACAAGCGAAGCTATAGAAG 781
Query 746 CTTGCA 751
|| |||
Sbjct 782 CT-GCA 786
Score = 704 bits (381), Expect = 0.0
Identities = 449/481 (93%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 776 AGCGAAGCTATAGAAGCTGCAGGTGTAACAGTGGTTACAGAGGGAATCCATATCTCCCGA 835
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 766 AGCGAAGCTATAGAAGCTGCAGGTGTAACAGTGGCTACAGAGGCAATCCATATCTCTCGA 825
Query 836 GTGGATGTACAGTTTCTATATTGATGAGTGTGAAGAAGCCAAAGCTGAAGGGCGAAACCA 895
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 826 GTGGATGTACAG-----ATATTGATGAGTGTGAAGAAGCCAAAGCTGAAGGAAGCAACCA 880
Query 896 TTGTGGGAAAGGGTATGATTGTGAGAATATACCAGGAAACTTTAGTTGTCAATCCAACAA 955
|||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 881 TTGTGGGAAAGGGTATGATTGTGAGAATATCCCAGGAAACTTTAGGTGTAAATCCAACAA 940
Query 956 AAACAAAAGACTAGCCATCATTCTTGGTAGTAGTCTAGGCTTTGGCTTGTTGTTTTTTGC 1015
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 941 AAACAAAAGACTAGCCATCATTCTTGGTATTAGTCTAGGCTTTGGCTTGTTG---GTAGC 997
Query 1016 CATTGGAGCATGGTTGTTGTATAAGTTTATCAGAAAGCAAAGGGAGATAAAGCGGAAGAA 1075
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CATTGGAGCATGGTGGTTGTATAAGTTTATCAGAAAGCAAAGGGAGATAAAGCGGAAGAA 1057
Query 1076 GTTCTATAAGAGTAGTGGAGGACTATTGCTGCAACAACAATTGGTTTCGAATGAAGGCAA 1135
||||| |||| || ||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 1058 GTTCTCTAAGCTTAATGGAGGACTATTGATGCAACAACAATTGGTTTCTAACGAAGGCAA 1117
Query 1136 CATTGAGAATACAAGAGCATTCAGCTCGAAAGAATTGGAGAAAGCCACAGAAAACAAGAG 1195
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1118 CATTGAGAATACAAGAGTATTCAGCTCGAAAGAATTGGAGAGAGCCACAGAAAACAAGAG 1177
Query 1196 TATTGCAACATAGAAAATCCTTGGAACGTTTTTACTGATTCTTCCTCCAACATCACCACC 1255
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1178 TATTGCAACATAGAAGATCCTTGGAACGTTTGTACTGATTCTTCCTCCAACATCACCACC 1237
Query 1256 A 1256
|
Sbjct 1238 A 1238
Score = 121 bits (65), Expect = 2e-26
Identities = 88/99 (89%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAGAGAG-AGCTTTTCCATATGTGCCCTGCTCTCTCTTCTGGTTCTGCTGATCCA 59
|||||||||||| || |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAGAGAGAAG-TTTTCCATATATAACTTGCTCTCTCTTCTGGTTCTGCTGATCCA 59
Query 60 TTGTTCGATTGCAGCAACTACTCAAGATCTCACGGTCTT 98
| ||| |||||||||| || ||||||||||||| |||||
Sbjct 60 TGGTTTGATTGCAGCATCTGCTCAAGATCTCACTGTCTT 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5