BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471815

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16170.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   628    1e-179


> AT1G16170.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 
plant structures; EXPRESSED DURING: 15 growth stages; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); 
Has 55 Blast hits to 55 proteins in 13 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr1:5538732-5539821 REVERSE LENGTH=697
Length=697

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 485/548 (89%), Gaps = 38/548 (7%)
 Strand=Plus/Plus

Query  1    TCCCTAAATTCCCGTTTTATGAAACGGACTTAATAAGCCGCGTACGGCGTATCCGGCAAA  60
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  44   TCCCTAAATTCCCGTTTTATGTAACGGACATAATAAGCCGCGTACGGCGTATCCGGCAAA  103

Query  61   TCGGCCCAGCT-----CA--A-C---CTACGGAGGAGAtctctctctctctctatctctc  109
            |||||||||||     ||  | |   ||||||||||||  || |  ||||||  ||||||
Sbjct  104  TCGGCCCAGCTCGAGCCATCATCAATCTACGGAGGAGA--TC-C-ATCTCTC--TCTCTC  157

Query  110  tctcCACATCGCAACAAGCCAACAACGCTGCTGGAGAGATTT-TGGGGTTGTCGACGGAG  168
            |||||| ||||   |||  |||| |  ||||| || ||||||  ||||||||||||||||
Sbjct  158  TCTCCATATCG---CAA--CAAC-A--CTGCT-GA-AGATTTCGGGGGTTGTCGACGGAG  207

Query  169  CTGGAATC-AGCTTTTTCTTCTCCAGATCTCT-TACCGATTCTCACCGGTTGGTTTTCTA  226
            |||||||| |||||||||||||||||||||||  |||||||||||||    ||  ||  |
Sbjct  208  CTGGAATCTAGCTTTTTCTTCTCCAGATCTCTAAACCGATTCTCACC----GG--TT-AA  260

Query  227  TTGGTATTATTAAGCAATGGTTCTTGATGGGCTTGTATCTTCACCATTAAGGAGACAACA  286
            |||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  261  TTGGTATTATAAAGCCATGGTTCTTGATGGGCTTGTATCTTCACCGTCAAGGAGACAACA  320

Query  287  GTGTCTAAAGAAGCAATGGGATGAGTTGGGTAGCTGGTCGACTCTTATTCAGAGGCATCA  346
             |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  321  ATGTCTAAAGAAGCAGTGGGACGAGTTGGGTAGCTGGTCGACTCTTATTCAGAGGCATCA  380

Query  347  ATATCTCTTGACAGCATTGGCTCTTTTGGCGTTCCTCTGTACTGTTTATCTTTACTTCGC  406
            ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  381  ATATCTCTTAACAGCTTTGGCTCTTTTGGCTTTCCTCTGTACTGTTTATCTTTACTTTGC  440

Query  407  TGTTACTTTAGGCGCCAGGCACTCGTCGTGCTATGGCTTGACCGGGAAAGACAAGGCAAT  466
             || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  441  AGTCACTTTAGGCGCTAGGCACTCGTCCTGCTATGGCTTGACCGGGAAAGACAAGGCAAT  500

Query  467  GTGTCAATTACAACATGTTCAAGCTATCTCCAAAGGGAAACTTAAATTCTTCTAGACTGT  526
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  501  GTGTCAATTACAACTTGTTCAAGCTCTCTCCAAAGGGAAACTTAAATTCTTCTAGACTGT  560

Query  527  T-ATTTAT  533
            | || |||
Sbjct  561  TTATCTAT  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30190722347


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5