BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471816
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16180.1 | Symbols: | Serinc-domain containing serine and s... 2211 0.0
> AT1G16180.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr1:5540427-5542902 FORWARD
LENGTH=1618
Length=1618
Score = 2211 bits (1197), Expect = 0.0
Identities = 1390/1480 (94%), Gaps = 26/1480 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCATGCGATGCTTGCCGT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 148 ATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCCGT 207
Query 61 ACTGTGGTTTCTGGGATCAGCAGACGTTCTGCTAGAATTGCTTACTGTGGTCTCTTTGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ACTGTGGTTTCTGGGATCAGCAGACGTTCTGCTAGAATTGCTTACTGTGGTCTCTTTGCA 267
Query 121 CTTTCCTTAATCGTTTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTTTCCTTAATCGTTTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTC 327
Query 181 CCTTGGATTAACCACTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CCTTGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTG 387
Query 241 TTGCGTGTCAGCTTAGGGAATTTCTTATTTTTCTCGATTCTGTCGGTTATGATGATCGGT 300
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 388 TTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATCGGTTATGATGATCGGT 447
Query 301 GTCAAAAATCAGAAAGACCCTCGTGATGGTATACACCATGGTGGTTGGATGATGAAGATA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 448 GTGAAAAATCAGAAAGACCCTCGTGATGGTATACACCATGGTGGTTGGATGATGAAAATA 507
Query 361 ATCTGTTGGTGCATTTTAGTCATCTTAATGTTCTTCCTTCCCAATGAAATCATCAGTTTC 420
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 508 ATCTGTTGGTGCATTTTAGTCATCTTTATGTTCTTCCTTCCAAATGAAATCATCAGTTTC 567
Query 421 TATGAGTCGATGTCAAAGTTTGGTGCTGGATTTTTTCTTCTTGTTCAAGTTGTGCTTCTT 480
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 568 TATGAGTCGATGTCAAAGTTTGGTGCTGGATTTTTCCTGCTTGTTCAAGTTGTACTTCTT 627
Query 481 TTGGATTTCGTTCATGGGTGGAATGACACGTGGGTTGGCTACGACGAGCAGTTCTGGTAT 540
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 628 TTGGATTTTGTTCATGGATGGAATGACACATGGGTTGGCTACGACGAGCAGTTCTGGTAT 687
Query 541 GCTGCGTTGCTCGTTGTGTCTCTTGTATGTTACTTGGCAACATTCGTCTTCTCTGGGCTT 600
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 688 GCTGCTTTGCTCGTTGTTTCTCTTGTATGTTACTTGGCAACATTCGTCTTCTCTGGGTTT 747
Query 601 CTCTTCCACTGGTTTACTCCATCTGGACATGATTGTGGACTCAACACTTTCTTCATTATC 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 748 CTCTTCCACTGGTTTACTCCATCTGGACATGATTGTGGACTCAACACCTTCTTCATTATC 807
Query 661 ATGACTTTGATATTTGTATTCGTCTTTGCTGTCGTAGTTTTGCATCCTGCTGTCGGTGGA 720
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 808 ATGACTTTGATATTTGTATTCGTCTTTGCCATTGTAGTTTTGCATCCTACTGTCGGTGGA 867
Query 721 AGCATTTTACCAGCATCCGTTATATCTCTCTACTGCATGTACCTCTGTTACAGCGGACTT 780
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 868 AGCATTTTACCAGCATCGGTTATATCTCTGTACTGCATGTACCTCTGTTACAGTGGACTT 927
Query 781 GCAAGTGAGCCCCGTGATTACGAGTGCAATGGTCTCCACAAACACTCCAAAGCTGTTTCA 840
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 928 GCAAGTGAACCCCGGGATTACGAGTGCAATGGTCTCCACAATCACTCTAAAGCTGTTTCA 987
Query 841 ACAGGCACAATGACCATTGGATTACTCACAACTGTACTCTCTGTCGTTTATTCCGCTGTT 900
|||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||
Sbjct 988 ACAGGCACAATGACCATTGGCTTACTCACAACTGTTCTCTCGGTTGTTTATTCTGCTGTT 1047
Query 901 CGTGCTGGTTCTTCAACTACTCTTCTCTCACCTCCTGATTCTCCTCGGGCAGAGAAGCCG 960
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1048 CGTGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGAGAAGCCT 1107
Query 961 CTGCTTCCGATAGATGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTG 1020
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 CTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTT 1167
Query 1021 TCATACTCATACGCATTCTTCCACATCATCTTCTCCCTCGCGAGCATGTACTCTGCAATG 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1168 TCATACTCATACGCATTCTTCCACATCATCTTCTCCCTTGCGAGCATGTACTCTGCAATG 1227
Query 1081 CTCTTAACCGGCTGGTCAACTTCAGTTGGTGAAAGTGGTAAGCTGGTGGATGTAGGGTGG 1140
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1228 CTCCTAACCGGCTGGTCAACTTCAGTTGGTGAAAGTGGTAAGCTGGTGGATGTCGGGTGG 1287
Query 1141 CCTTCAGTGTGGGTCCGTGTTGTGACCAGCTGGGCCACTGCTGGTCTCTTCATCTGGTCG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CCTTCAGTGTGGGTCCGTGTTGTGACCAGCTGGGCCACTGCTGGTCTCTTCATCTGGTCC 1347
Query 1201 CTTGTTGCTCCCATTCTCTTCCCCGACCGTGAGTTCTGAGCTAATGCATCTACTGGAGAT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1348 CTTGTTGCTCCCATTCTCTTCCCCGACCGTGAGTTCTGAGCTAATGCATCTACTTGAGAT 1407
Query 1261 CCTGAAAAACTTTTCATGAATCTTGAATTTGTaaaaaaaaaaaaaTTATTCTATCTTTCG 1320
||||| ||||||||||||||||| |||||||||||||| | |||| |||||||
Sbjct 1408 TCTGAATAACTTTTCATGAATCTTCAATTTGTAAAAAAA------T-ATTCGATCTTTCT 1460
Query 1321 ACTATAATAGAGTC-TCGTTTGCTTAATCACGCATGGTCTTTGTTGGCACATCTGTAATA 1379
||||||||||| | |||| |||||||||||| |||| |||||||||| | |||||||||
Sbjct 1461 ACTATAATAGAA-CATCGTGTGCTTAATCACGAATGGCCTTTGTTGGCCCTTCTGTAATA 1519
Query 1380 T-AA--T--T-----------CCTTTCTCGTAATTTTCATCGGTCTCGAATTCCCCACAA 1423
| || | | |||||||||||||||||||| ||||||| ||| ||||||
Sbjct 1520 TGAAGATGATATAAATAAATTCCTTTCTCGTAATTTTCATCTGTCTCGACTTCTCCACAA 1579
Query 1424 TTGCGTTTTGTACGATTTAGCGTTTGTCTTTTGTTTGGTC 1463
|||||||||| ||||| |||||||| ||||||||||||
Sbjct 1580 TTGCGTTTTGCCCGATTC-GCGTTTGTGTTTTGTTTGGTC 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5