BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471818
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16210.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1310 0.0
> AT1G16210.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422);
Has 16107 Blast hits to 8386 proteins in 1107 species:
Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516;
Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source:
NCBI BLink). | chr1:5546128-5547552 REVERSE LENGTH=1034
Length=1034
Score = 1310 bits (709), Expect = 0.0
Identities = 844/908 (93%), Gaps = 13/908 (1%)
Strand=Plus/Plus
Query 1 CGAGAGAGATCAATT-ACCCCTATCAAATCGAAGATGCCGAAGAAGATGGGTCTGAACAG 59
||||||||||||||| ||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 73 CGAGAGAGATCAATTAACCCC-AGCGAATCGAATATGCCGAAGAAGATGGGTCTGAACAG 131
Query 60 CAAGGCGGAGGTCGCCAAATCCCGGAAGAACGCGGCCGAGGCTGAGCAGAAGGATCGTCA 119
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 132 CAAGGCGGAGGTCGCCAAATCTCGTAAGAACGCCGCGGAGGCTGAGCAGAAGGATCGTCA 191
Query 120 GACTCGGGAGAAGGAAGAACAATACTGGCGCGAGGCCGAGGGTCCCAAATCCAAGGCGGC 179
|||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||
Sbjct 192 GACTCGGGAGAAAGAGGAACAATACTGGCGCGAGGCGGAAGGTCCCAAATCCAAAGCGGT 251
Query 180 CAAGAAGCGAGAAGAGGAGGCGGAGAAGAAGGCCGAGACCGCCGCTAAGAAAGCCGAGGC 239
||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 252 GAAGAAGCGAGAAGAGGAAGCGGAGAAGAAGGCAGAGACCGCCGCTAAGAAATTGGAGGC 311
Query 240 GAAGCGTCTGGCTGAGCAGGAGGAGAAAGAGTTGGAGAAGGCTTTGAAAAAGCCAGACAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GAAGCGTCTGGCTGAGCAGGAGGAGAAAGAGTTGGAGAAGGCTTTGAAAAAGCCAGACAA 371
Query 300 GAAGGCGAATCGCGTCACTGTGCCGGTCCCTAAGGTCACAGAGGCTGAGCTCATACGAAG 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 372 GAAGGCGAATCGCGTCACTGTGCCGGTTCCTAAGGTCACAGAGGCTGAGCTCATCCGAAG 431
Query 360 GCGCGAGGAGGAGCAGGTGGCGCTAGCTAAGAAAGCAGAAGACTCTAAGAAGAAACAGAC 419
|||||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 432 ACGCGAGGAAGATCAAGTGGCTCTGGCTAAGAAAGCAGAAGACTCTAAGAAGAAACAGAC 491
Query 420 TCGCATGGCAGGGGAAGATGAGTATGAAAAGATGGTACTGGTAACCAATACCAATCGCGA 479
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 492 TCGCATGGCAGGGGAAGATGAGTATGAAAAGATGGTTCTGGTGACCAATACCAATCGCGA 551
Query 480 TGATTCTCTCATCGAGGCACATACCGTTGACGAGGCGCTTGCTCGGATTACGGTGTCAGA 539
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 552 TGATTCTCTCATCGAGGCACATACCGTTGACGAGGCTCTTGCACGGATTACTGTGTCAGA 611
Query 540 TAACCTGCCCGTTGATCGACACCCGGAGAAGAGGCTCAAGGCTTCATTTAAGGCCTATGA 599
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 612 TAACCTGCCCGTTGATCGACACCCGGAGAAGAGGCTCAAGGCTTCTTTTAAGGCATATGA 671
Query 600 AGAAGCAGAACTTCCAAGGCTCAAGGAGGAGAAACCAGGTCTTACTCACACTCAGTACAA 659
||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 672 AGAAGTGGAACTTCCAAGGCTCAAGTCTGAGAAACCAGGTCTAACTCACACACAGTACAA 731
Query 660 GGACTTGATATGGAAGATGTGGAAGAAATCACCAGATAATCCTCTTAACCAGGCTGC--- 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GGACTTGATATGGAAGATGTGGAAGAAATCACCAGATAATCCTCTTAACCAGGCTGCGGC 791
Query 717 TGCTGCTGCTAATGAGTGAAATGCAACTTGGAGTCAGAACAAGGGAAGGTATGATGAAGA 776
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 792 TGCTGCTGCTAATGAGTGAAATGCAACCTGGAGTCAGAACAATGGAAGGTGTGATGAAGA 851
Query 777 GGGAGATGCATGGCAGAGAGTATGATGCAAATCTTTTGTTTCCCAGAGAAA-ATGTTT-G 834
||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||| |
Sbjct 852 AGGAGATGCATGGCAGAGAGCATGATGAAAATCTTTTGTTTCCCAGA-AAATATGTTTAG 910
Query 835 C-ATA-ATTCTGCTCGCCAACATTGCTTATTGTTTCTTGTGCTTTGTGTATAAACACTAT 892
| | || ||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TGAGAGATACTG-T-GT-AACATTGCTTATTGTTTCTTGTGCTTTGTGTATAAACACTAT 967
Query 893 GATATAGC 900
||||||||
Sbjct 968 GATATAGC 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5