BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471821
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16240.1 | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 |... 1439 0.0
AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 |... 701 0.0
> AT1G16240.1 | Symbols: SYP51, ATSYP51 | syntaxin of plants 51
| chr1:5555007-5556841 REVERSE LENGTH=1088
Length=1088
Score = 1439 bits (779), Expect = 0.0
Identities = 866/907 (95%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 121 ACAAAGGTCCGAGGAATAATTTGGGATAATGGCGTCTTCGTCGGATTCATGGATGAGAGA 180
||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 186 ACAAAGGTCCGAGAAATAATTTGGAATAATGGCGTCTTCATCGGATTCATGGATGAGAGC 245
Query 181 ATACAACGATGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATACAACGAGGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 305
Query 241 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 365
Query 301 CATTTTCGGTACCCGATTAGACAGTCTGCAGTCTCTTCTTGCTCAAATTCATGGAAAACC 360
||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 366 CATTTTCGGTAACAAATTAGATAGTCTGCAGTCTCTTCTTGCTGAAATTCATGGAAAACC 425
Query 361 TATTTCTGAGAAAGAGATGAATCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGC 420
|||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 426 TATTTCAGAGAAAGAGATGAATCGGCGAAAGGATATGGTAGGGAATCTGAGGTCAAAAGC 485
Query 421 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 486 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTCGG 545
Query 481 GCCAGAAATAAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAGGGAAT 540
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 546 GCCAGATATCAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAAGGAAT 605
Query 541 TGTTGGTTATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TGTTGGATATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 665
Query 601 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 666 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTGACTTGCAGAC 725
Query 661 AAGGCTTATTGATGACTTAGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAG--T 718
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 726 TAGGCTTATTGATGACTTAGATTACCATGTGGATGTTACTGACTCTCGCTTAAGGAGAGT 785
Query 719 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 845
Query 779 GCTCTTGTCAGTGCTGGGGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 846 GCTCTTGTCAGTGCTGGGGATCGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 905
Query 839 TCTGTAATACCAACATCAGAAAACTTATAAGTTTCTCTGTAGGTCACTGTCACTGGCCTC 898
| |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||
Sbjct 906 TATGTAATACCAACATCAGACAACTTATAAGTTCCTCTGTAGGTC-C----ACTGGCCTC 960
Query 899 TACTCTCTATGTGAATGGTTGCAATGTATTTTCCTCATTCCACATTTGTGGTTGAGCTTT 958
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 961 TACTCTCTATGTGAATGGTTGCAATGTATTT-CCTCATTCCACATTTGTGGCTGAGCTTT 1019
Query 959 TCATTTCTCTTCTGTTAC-AAGAACCCTTAAAGTATTATATAATGTGTGCAGTTTTCACA 1017
|||||||||||||||||| || ||||||| ||||| |||||||||||||||||| |||||
Sbjct 1020 TCATTTCTCTTCTGTTACCAA-AACCCTTTAAGTAATATATAATGTGTGCAGTTATCACA 1078
Query 1018 GTTTGCT 1024
|||||||
Sbjct 1079 GTTTGCT 1085
> AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52
| chr1:29946296-29948565 FORWARD LENGTH=1139
Length=1139
Score = 701 bits (379), Expect = 0.0
Identities = 607/716 (85%), Gaps = 19/716 (3%)
Strand=Plus/Plus
Query 148 AATGGCGTCTTCGTCGGATTCATGGATGAGAGAATACAACGATGCTTTAAAACTCTCTGA 207
|||||| ||||| |||||| ||||||||||||| ||||| || ||||| |||||||||||
Sbjct 176 AATGGCCTCTTCTTCGGATCCATGGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGA 235
Query 208 GGAGATTAATGGAATGATATCAGAAA-GAAGTTCAT-CGGCTGTCACAGGGCCTGATGCT 265
||| |||||||| ||||| || |||| ||| | | | ||| | | || ||||||||||||
Sbjct 236 GGATATTAATGGCATGATGTCTGAAAGGAA-TGCCTCCGGGT-TAACCGGGCCTGATGCT 293
Query 266 CAGCGTCGTGCTTCAGCTATACGAAGGAAGATCACCATTTTCGGTACCCGATTAGACAGT 325
|| |||||||| || || || ||||| |||||||||||||| || || ||||||||||||
Sbjct 294 CAACGTCGTGCCTCTGCAATTCGAAGAAAGATCACCATTTTGGGGACTCGATTAGACAGT 353
Query 326 CTGCAGTCTCTTCTTGCTCAA-ATTCATGG-AA--AACCTATTTCTGAGAAAGAGATGAA 381
||||| || ||||||| |||| ||| ||| || | | | |||| ||||||||||||||
Sbjct 354 CTGCAATCCCTTCTTG-TCAAGGTTCCTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAA 412
Query 382 TCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGCAAACCAGATGGCGAATGCTTT 441
||| |||||||||||||| |||||||||||||||||| |||| ||| |||| ||||||
Sbjct 413 TCGTCGCAAGGATATGGTTGGGAATTTGAGATCAAAAACAAATCAGGTGGCCTCTGCTTT 472
Query 442 GAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGGGCCAGAAATAAAGCCGGATGA 501
||| |||||||||||||| || |||||||||||| |||| |||| |||||||||||||
Sbjct 473 GAATATGTCAAACTTTGCAAACAGAGACAGCTTGTTTGGAACAGATTTAAAGCCGGATGA 532
Query 502 TTCCATGAGCAGAGT-TACTGGCATGGATAACCAGGGAATTGTTGGT-TATCAACGACAA 559
| | || | ||||| | |||||||||| ||||| ||||||||| || | |||||| |||
Sbjct 533 TGCGATAAATAGAGTCT-CTGGCATGGACAACCAAGGAATTGTT-GTATTTCAACGGCAA 590
Query 560 GTTATGAGAGAACAAGACGAAGGACTTGAGCAA-TTGGAGGGAACAGTCATGAGCACAAA 618
|||||||||||||||||||| ||||||||| || ||||||| |||||||||||| || ||
Sbjct 591 GTTATGAGAGAACAAGACGAGGGACTTGAG-AAGTTGGAGGAAACAGTCATGAGTACCAA 649
Query 619 ACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGACAAGGCTTATTGATGACTT 678
|||||||||||| ||||||| || ||||| | | |||||||||||||||||||||||||
Sbjct 650 ACACATTGCTCTCGCTGTTAACGAGGAGCTCACCCTGCAGACAAGGCTTATTGATGACTT 709
Query 679 AGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAGTG--CAGAAGAGCCTTGC-TG 735
||||||| |||||||| |||||||||||||||||||| ||| || ||||||||||| |
Sbjct 710 AGATTACGATGTGGATATCACTGACTCTCGCTTACGGCGTGTTCAAAAGAGCCTTGCCT- 768
Query 736 TCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAATGCTCTTGTCAGTGCTGG 795
| |||||||||| |||| |||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 769 TGATGAACAAGAGCATGAAAAGTGGTTGCTCATGCATGTCTATGCTCTTGTCTGTGCTTG 828
Query 796 GGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTATCTGTAATACCAA 851
| || || ||||||||| ||||||| ||| || |||||||||| ||||||| ||||
Sbjct 829 GAATCGTTGGTCTTGCTCTTGTAATTTGGCTGCTGGTTAAGTACCTGTAATGCCAA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5