BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471825
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | c... 2289 0.0
> AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=1476
Length=1476
Score = 2289 bits (1239), Expect = 0.0
Identities = 1401/1478 (95%), Gaps = 16/1478 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAACCGA-GATCGGAGGATGAAGGGGGAATCACAATCATGGCTAAATCCCGCAA 59
||||||||||| | | ||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 1 ATGGAGGAACCAACG-CCGGAGGAGGAAGGGGGAATCACCATCATGTCTAAATCCCGCAA 59
Query 60 GAATCCTAAAACCGTAGTACAA-ATTCAGTCTCAGAAACTTGATTCCGACCAGAATGCTC 118
|||||||||||||||||| || |||||||| |||||||||||||| ||||||||| |||
Sbjct 60 AAATCCTAAAACCGTAGTA-AACATTCAGTCCCAGAAACTTGATTCGGACCAGAATACTC 118
Query 119 CTCAATTTGAGAAATTCACAAATCCCAACCCTAGTTCCG--------T-CG---CTAATT 166
||||||||||||||||||| ||||| |||||||| |||| | || ||||||
Sbjct 119 CTCAATTTGAGAAATTCACTAATCCTAACCCTAGCTCCGACACCACATCCGCCACTAATT 178
Query 167 TCGAAGGGCTCGGATTAGCTGAGTGGGCAGTGGAAACGTGTAAAGAGCTTGGCATGCGTA 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCGAAGGGCTCGGATTAGCTGAGTGGGCAGTGGAAACGTGTAAAGAGCTTGGGATGCGTA 238
Query 227 AACCGACTCCAGTTCAAACTCACTGCGTGCCGAAGATATTGGCCGGACGAGACGTTTTAG 286
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 AACCCACTCCAGTTCAAACTCACTGCGTGCCGAAGATATTAGCCGGACGAGACGTTTTAG 298
Query 287 GGCTTGCTCAGACTGGTAGTGGTAAAACGGCGGCGTTTGCTCTACCGATACTTCACCGCC 346
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 299 GGCTTGCTCAGACTGGTAGTGGTAAAACTGCTGCGTTTGCTCTACCTATACTTCACCGCC 358
Query 347 TCGCTGAAGATCCTTATGGGGTCTTCGCGCTTGTAGTGACGCCGACTAGAGAGCTAGCGT 406
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGCTGAAGATCCTTATGGAGTCTTCGCGCTTGTAGTGACGCCGACTAGAGAGCTAGCGT 418
Query 407 TCCAGCTCGCTGAGCAGTTTAAAGCTTTGGGTTCGTGTTTGAATTTGCGTTGCTCTGTAA 466
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TCCAGCTCGCTGAGCAGTTTAAGGCTTTGGGTTCGTGTTTGAATTTGCGTTGCTCTGTAA 478
Query 467 TTGTGGGAGGAATGGATATGTTGACGCAAACGAGGAGCTTGGTTTCACGACCTCATATCG 526
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 479 TTGTGGGAGGAATGGATATGTTGACGCAAACTATGAGCTTGGTTTCACGACCTCATATCG 538
Query 527 TTATTACTACTCCTGGGAGGATTAAGGTTTTGCTTGAAAACAATCCTGATGTTCCTCCAG 586
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 539 TTATTACTACTCCTGGAAGAATCAAGGTTTTGCTTGAAAACAATCCTGATGTTCCTCCAG 598
Query 587 TTTTCTCTAGAACCAAGTTCTTAGTACTGGACGAGGCGGATAGAGTTCTTGATGTTGGTT 646
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TTTTCTCTAGAACCAAGTTCTTAGTGCTGGACGAGGCGGATAGAGTTCTTGATGTTGGTT 658
Query 647 TTCAAGACGAGTTGCGGACTATCTTTCAGTGTCTGCCAAAGACTAGACAAACATTGTTGT 706
| ||||||||||| || || |||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TCCAAGACGAGTTACGCACAATCTTTCAGTGTCTGCCAAAGAGTAGACAAACATTGTTGT 718
Query 707 TCTCTGCTACGATGACTACTAACTTACAGACATTGCTCGAACATTCTTCAAACAAAGCTT 766
|||||||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||
Sbjct 719 TCTCTGCTACCATGACTAGTAACTTACAGGCTTTGCTTGAACATTCTTCAAACAAAGCTT 778
Query 767 ATTTCTATGAAGCATATGAAGGCTTTAAGACTGTTGACACTCTTACGCAGCAGTTCATTT 826
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 779 ATTTCTATGAAGCCTATGAAGGGTTAAAGACTGTTGACACTCTTACGCAGCAGTTCATTT 838
Query 827 TCGAAGACAAAGATGCTAAAGAACTATATCTTGTGCACATACTGTCGCAAATGGAAGATA 886
|||||||||||||||| ||||| || |||||||||||||| || |||||||||||||| |
Sbjct 839 TCGAAGACAAAGATGCCAAAGAGCTGTATCTTGTGCACATCCTCTCGCAAATGGAAGACA 898
Query 887 AGGGCATTCGATCAGCCATGATTTTTGTCTCCACTTGCAGAACATGTCAAAGGTTAAGTC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGGGCATTCGATCAGCCATGATTTTTGTCTCCACTTGCAGAACATGTCAAAGGTTAAGTC 958
Query 947 TTATGCTTGAAGAGCTTGAAGTGGAAAACGTAGCTATGCATTCTCTGAATTCTCAGTCTA 1006
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 TTATGCTTGACGAGCTTGAAGTGGAAAATATAGCTATGCATTCTCTGAATTCTCAGTCTA 1018
Query 1007 TGCGACTATCTGCACTAAGTAAATTCAAGTCTGGGAAAGTACCGATATTGCTTGCGACTG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCGACTATCTGCACTAAGTAAATTCAAGTCTGGGAAAGTACCGATATTGCTTGCGACTG 1078
Query 1067 ATGTTGCCAGCCGTGGATTGGATATTCCTACTGTCGACCTTGTCATCAATTATGACATTC 1126
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1079 ATGTTGCCAGCCGTGGATTGGACATTCCTACTGTTGACCTTGTCATCAATTATGACATTC 1138
Query 1127 CGAGAAATCCGAGGGATTATGTTCATCGTGTTGGACGTACAGCTAGAGCTGGTAGAGGAG 1186
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGAGAGATCCTAGGGATTATGTTCATCGTGTTGGACGTACAGCTAGAGCTGGTAGAGGAG 1198
Query 1187 GACTGGCTGTAAGCATTATCACTGAGACCGATGTGAAACTTATCCATAAGATAGAAGAGG 1246
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 GACTGGCTGTAAGCATTATCACTGAGACCGATGTGAAACTTATCCATAAAATAGAAGAGG 1258
Query 1247 AAGTTGGAAAAAAGATGGAACCGTACAACaaaaaaaTAATCACTGACAGTGTAGAAGTCA 1306
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1259 AAGTTGGAAAAAAGATGGAACCATACAACAAAAAAGTAATCACTGACAGTTTAGAAGTCA 1318
Query 1307 CAAAGGTCTCAAAAGCCAAAAGGGTGGCAATGATGAGGATGCTAGATAATGGATTCGAAG 1366
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1319 CAAAGGTCTCAAAAGCCAAAAGAGTGGCAATGATGAAGATGCTAGATAATGGATTCGAAG 1378
Query 1367 ACAAGGTTAAAGACCGGAGGAAATTGAAACGTAAAACACTTGCGGATAAAGGGTTGCTTA 1426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1379 ACAAGGTTAAAGACCGGAGGAAATTGAAACGGAAAACACTTGCGGATAAAGGGTTGCTTA 1438
Query 1427 AGAAACGGAGCAAAAGGCAGAAATCAACAGAAAATTGA 1464
|||||||| |||||||||||||||||||||||||||||
Sbjct 1439 AGAAACGGGGCAAAAGGCAGAAATCAACAGAAAATTGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5