BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471827
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16300.1 | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate deh... 2224 0.0
AT1G79530.1 | Symbols: GAPCP-1 | glyceraldehyde-3-phosphate deh... 1365 0.0
> AT1G16300.1 | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate dehydrogenase
of plastid 2 | chr1:5574310-5577622 FORWARD LENGTH=1602
Length=1602
Score = 2224 bits (1204), Expect = 0.0
Identities = 1321/1377 (96%), Gaps = 10/1377 (1%)
Strand=Plus/Plus
Query 1 TTTTTAACTC-AACAGAACATTTTCTTGGCTCCACAGCTACACTCAAAAGCCATTCAGCG 59
||||| |||| ||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 12 TTTTTTACTCAAAC-GAACATTTTCGTGGCTCCAGAGCTACACTCAAAAGCCATTCAGCG 70
Query 60 G-A------AGG-TTTTTGGCGGCGAGATCTCTCTGTTTCTGGTAGCTTAGCTATGGCCT 111
| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 71 GAAGGGGTTAGGATTTTTGGCGGCGAGATCTCTCTGTTTCTGGTAGCTTAGCAATGGCCT 130
Query 112 TCTCTTCTCTCCTCAGATCCGCCGCCACTTCCGCCGCAGCTCCTCGTGTTGAGCTTTATC 171
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 131 TATCTTCTCTCCTCAGATCTGCCGCCACTTCCGCCGCAGCTCCTCGTGTCGAGCTTTATC 190
Query 172 CATCGTCATCGTACGATCATTCTCAGGTCACGTCAAGTCTTGGATTCACTCACAATCTGA 231
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 191 CATCGTCATCGTACAATCATTCTCAGGTCACGTCAAGTCTTGGATTCAGTCATAGCCTGA 250
Query 232 CCTCGTCTAGATTTTCTGGTGCTGCAGTTTCAACTGGAAAATGCAATGCGAAGAGCGTTC 291
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 251 CCTCGTCTAGATTTTCTGGTGCTGCAGTTTCAACCGGAAAATACAATGCGAAGAGGGTTC 310
Query 292 AACCCATCAAGGCCACAGCTACAGAAGCACCTCCTATTGTTCATAGGTCAAGGAGCAGTG 351
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 311 AACCCATCAAGGCCACAGCTACGGAAGCACCTCCTGCTGTTCATAGGTCAAGGAGCAGTG 370
Query 352 GAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATTGGAAGGTTGGTCCTCCGCATCG 411
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 371 GAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATTGGAAGATTGGTCCTCCGCATCG 430
Query 412 CTACCTTTAGGGATGATATTGAGGTTGTAGCAGTCAACGATCCATTCATAGACGCCAAGT 471
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 431 CAACCTTTAGGGATGATATCGAGGTTGTAGCAGTCAACGATCCATTCATAGATGCCAAGT 490
Query 472 ACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAAATTACAAAGGAACCATCAATG 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 491 ACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAAATTACAAAGGAACTATCAATG 550
Query 532 TAATTGATGATTCTACTTTGGAGATCAATGGAAAACAGGTCAAAGTTGTCAGCAAGAGAG 591
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 551 TAATTGATGATTCAACTTTGGAGATCAATGGAAAACAAGTCAAAGTTGTCAGCAAGAGAG 610
Query 592 ACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGAGTATGTTGTTGAGTCTTCGGGGG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 611 ACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGAGTATGTTGTTGAGTCTTCAGGGG 670
Query 652 TATTCACCACCGTTGGACAAGCTTCATCACATTTGAAGGGTGGCGCCAAGAAAGTCATCA 711
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 671 TATTCACCACCGTTGGACAAGCTTCATCACATTTGAAGGGTGGTGCTAAGAAGGTCATCA 730
Query 712 TTTCTGCACCTTCAGCGGACGCGCCCATGTTCGTTGTTGGAGTAAATGAGAAGACATACC 771
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 731 TTTCTGCACCTTCAGCGGACGCGCCCATGTTTGTTGTTGGAGTAAATGAAAAGACATACC 790
Query 772 AACCTAACATGGATATAGTCTCCAATGCAAGCTGTACCACCAATTGCCTTGCACCTCTTG 831
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 791 TGCCTAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCACCTCTTG 850
Query 832 CCAAGGTGGTGCATGAGGAATTTGGAATTCTTGAAGGCTTGATGACAACAGTCCACGCGA 891
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 851 CCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAAGGCTTGATGACAACAGTCCACGCGA 910
Query 892 CCACAGCTACTCAGAAAACTGTGGACGGCCCATCAATGAAGGACTGGAGAGGAGGCAGAG 951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 911 CCACAGCTACTCAGAAAACTGTGGACGGCCCATCAATGAAGGACTGGAGAGGAGGCCGAG 970
Query 952 GCGCTAGTCAAAACATCATTCCTAGCTCAACCGGCGCTGCAAAGGCTGTTGGTAAGGTCC 1011
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 GCGCAAGTCAAAACATCATTCCTAGCTCAACAGGCGCTGCAAAGGCTGTTGGTAAGGTCC 1030
Query 1012 TTCCGGAACTCAATGGAAAACTAACGGGAATGGCCTTCCGTGTCCCAACACCAAATGTTT 1071
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1031 TTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCT 1090
Query 1072 CTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCTTATGAAGACGTTAAGGCAG 1131
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1091 CTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCGTATGAAGACGTCAAGGCAG 1150
Query 1132 CCATAAAGTTTGCATCAGAAGGACCACTTAGGGGCATTCTTGGATATACAGAAGAAGATG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CCATAAAGTTTGCATCAGAAGGACCACTTAGGGGCATTCTTGGATATACAGAAGAAGATG 1210
Query 1192 TCGTCTCTAATGATTTTCTTGGAGATTCAAGGTCAAGTATCTTTGATGCTAATGCTGGGA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TCGTCTCTAATGATTTTCTTGGAGATTCAAGGTCAAGTATCTTTGATGCTAATGCTGGGA 1270
Query 1252 TTGGATTAAGCAAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TTGGATTAAGCAAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACA 1330
Query 1312 GTAACCGAGTCCTTGACCTGATAGAGCACATGGCGTTAGTTGCAGCCAGCTGCTAAA 1368
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1331 GCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCGCTAAA 1387
> AT1G79530.1 | Symbols: GAPCP-1 | glyceraldehyde-3-phosphate dehydrogenase
of plastid 1 | chr1:29915902-29919234 REVERSE LENGTH=1745
Length=1745
Score = 1365 bits (739), Expect = 0.0
Identities = 1108/1284 (86%), Gaps = 34/1284 (3%)
Strand=Plus/Plus
Query 105 ATGGCCTTCTCTTCTCTCCTCAGATCCGCCGCC-ACTTC-C-GCCGCAGCTCCTCGTGTT 161
|||||||||||||||||||||||||| |||||| || | | | || |||||||| |
Sbjct 147 ATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCTCCTACACGGTTGCCGCTCCTCGCCCT 206
Query 162 GAGCTTTATC-CATCGTCATCGTAC-GATCATTCTCAGGTCACGTCAAGTCTTGGATTCA 219
|| |||| || | ||| | ||| | ||||||||| |||| ||||||||||||||| |
Sbjct 207 GA-CTTTTTCTCGTCGCCGGCGT-CTGATCATTCTAAGGTGTTGTCAAGTCTTGGATTTA 264
Query 220 CTCACAATCTG-ACCTCGTCTAGATTTTCTGGTGCT-GCA-GT-TTCA--ACTGGAAAAT 273
|| ||| ||| | | | || ||||||||| | || | | | |||| || |||||
Sbjct 265 GTCGCAACCTGAAGC-CATCAAGATTTTCT--T-CTGGGATATCTTCATCTCTACAAAAT 320
Query 274 -GCAATGCGAAG-AGCGTTCAACCCATCAAGGCCACAGCTACAGAAGCACC-TCCTATTG 330
||||||| ||| || || ||||||||||||||||| |||||||||| || | || |
Sbjct 321 GGCAATGC-AAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGTGCCAT-CTGCAG 378
Query 331 TTC-ATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATT 389
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 379 TTCGA-AGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGGATT 437
Query 390 GGAAGGTTGGTCCTCCGCATCGCTACCTTTAGGGATGATATTGAGGTTGTAGCAGTCAAC 449
|||||||||||||||||||| || || | |||||||||||||||||||||||||| ||
Sbjct 438 GGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATATTGAGGTTGTAGCAGTGAAT 497
Query 450 GATCCATTCATAGACGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTCATGGA 509
|| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 498 GACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGA 557
Query 510 AATTACAAAGGAACCATCAATGTAATTGATGATTCTACTTTGGAGATCAATGGAAA-ACA 568
|||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 558 AATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTTGGAGATCAATGGGAAGA-A 616
Query 569 GGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGA 628
|||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||
Sbjct 617 GGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATGGGCTGATCTTGGAGCTGA 676
Query 629 GTATGTTGTTGAGTCTTCGGGGGTATTCACCACCGTTGGACAA-G-CTTCATCACATTTG 686
||||||||||||||||| || |||||||||||| | | ||| | || |||| ||||||
Sbjct 677 TTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCT-GT-CAAAGGCTGCATCCCATTTG 734
Query 687 AAGGGTGGCGCCAAGAAAGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATGTTCGTT 746
||||| || ||||||||||| || |||||||| ||||| || ||||| || ||||| |||
Sbjct 735 AAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGACGCACCTATGTTTGTT 794
Query 747 GTTGGAGTAAATGAGAAGACATACCAACCTAACATGGATATAGTCTCCAATGCAAGCTGT 806
||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 795 GTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGT 854
Query 807 ACCACCAATTGCCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGAATTCTTGAA 866
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 855 ACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAA 914
Query 867 GGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGCCCATCA 926
|||||||||||||| |||||||| || |||||||||||||||||||| || || ||||||
Sbjct 915 GGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGGCCATCA 974
Query 927 ATGAAGGACTGGAGAGGAGG-CAGAGGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 985
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 975 ATGAAGGACTGGAGAGGAGGTCGG-GGCGCTAGTCAAAACATCATTCCTAGCTCAACCGG 1033
Query 986 CGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACGGGAATGGC 1045
||| || |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||
Sbjct 1034 CGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGAATGGC 1093
Query 1046 CTTCCGTGTCCCAACACCAAATGTTTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGGA 1105
||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1094 CTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAGAAGGG 1153
Query 1106 TGCATCTTATGAAGACGTTAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTTAGGGG 1165
||| ||||| ||||| |||||||||||||| ||| ||| ||||||||||| |||| ||
Sbjct 1154 TGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGAAGGACCTCTTAAAGG 1213
Query 1166 CATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTT-GGAGATTCAAGGT 1224
|||||| || || ||||| |||||||||||||| |||||||| | | || ||||||||||
Sbjct 1214 CATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTT-CGTCGGTGATTCAAGGT 1272
Query 1225 CAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACTTGTCT 1284
| ||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1273 CCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTTTGTGAAACTTGTCT 1332
Query 1285 CCTGGTATGACAACGAATGGGGTTACAGTAACCGAGTCCTTGACCTGATAGAGCACATGG 1344
| ||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1333 CTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGG 1392
Query 1345 CGTTAGTTGCAGCCAGCTGCTAAA 1368
| || || || |||||| |||||
Sbjct 1393 CTTTGGTAGCTGCCAGCCACTAAA 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5