BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471829
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DU... 1748 0.0
> AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:5580855-5582143 FORWARD LENGTH=1129
Length=1129
Score = 1748 bits (946), Expect = 0.0
Identities = 1057/1110 (95%), Gaps = 10/1110 (1%)
Strand=Plus/Plus
Query 1 ATTTCTCTGGCTCAGAATCGTCGCCATGAAAATGT-AAGAAGAAACAAAGACGAGCTCTC 59
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 24 ATTTCTCTGGCTCAGAATCGACGCCATGGAAATGTAAAGAAGAAACAAAGACGAGCTCTC 83
Query 60 AAACCCAGAAGCCATGGCTTTTCTTCTTCCTAATCTATCATCTCCCTCAATCCATCTTCA 119
||| |||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 84 AAATCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCATCTCCGTCAATCCATCTTCA 143
Query 120 AACCGGAAAATACCCAAACCTTAAACCCATTTTCAGTCAATCTCTATCGTCGTCGTCGTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 144 AACCGGAAAATACCCAAACCTTAAACCCATTTTCAGTCAATCTCTATCGTC-T--TCGTC 200
Query 180 TTCTGTTAGCTACGAATTCGTGGAAGATAATATATCGACACACTCTCTTTTGAGCATCCA 239
|||||||||||||||||| || ||||| ||| |||| |||| |||||| |||||||||||
Sbjct 201 TTCTGTTAGCTACGAATTTGTAGAAGAGAATCTATCTACACTCTCTCTATTGAGCATCCA 260
Query 240 GTCTCCTCCTCTTAAAGACACGCAGGTTCAGACAAGACACAGTTCGCAAGATAAGCATAA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 261 GTCTCCTCCTCTTAAAGACACGCAAGTTCAGACAAGACACAGTTCGCAAGATAAGCATAA 320
Query 300 TAACCACGACAGAGATGAATTCTATATCAATCTTGGTGTCGCTGTCCGTACGCTTCGTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 TAACCACGACAGAGATGAATTCTATATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGA 380
Query 360 AGATTTGCCTTTGCTCTTCACTAGAGACCTTAATTACGACATCTACAGGGATGATATAAC 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 381 AGATTTGCCTTTGCTCTTCACTAGAGATCTTAATTACGACATCTACAGGGATGATATAAC 440
Query 420 ATTTGTGGATCCGATGAACACATTTACTGGGATTGAAAACTACAA-ATTGATCTTCTGGG 478
|||||||||||||||||||||||| |||||||| || |||||||| ||| ||||||||||
Sbjct 441 ATTTGTGGATCCGATGAACACATTCACTGGGATGGACAACTACAAGATT-ATCTTCTGGG 499
Query 479 CACTCAGATTTCATGGGAAGATATTGTTCAGAGATATCTCACTTGAGATCTTCAGGGTAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 CACTCAGATTTCATGGGAAGATATTGTTCAGAGATATCTCACTTGAGATCTTCAGAGTAT 559
Query 539 GGCAACCATCAGAGAACATGATTCTTATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTC 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 560 GGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTC 619
Query 599 CATGGGAAGCTAAAGGAGAGTTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CATGGGAAGCTAAAGGAGAGTTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCA 679
Query 659 AAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTG 739
Query 719 CAGCTTCGGTTTTGGATTTGGTGACTGCTTCCCCTGCAAGTAGTCCCAATCCAACGTTCT 778
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 740 CAGCTTCGGTTTTGGATTTGGTGACTGCTTCCCCTGCAAGCAGTCCTAATCCTACGTTCT 799
Query 779 TTTTCGGTCCTGTGGACTCTTATTCATCTTCATGGACTAAGTTTTATCAAGCGGTGAGAG 838
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 800 TTTTCAGTCCTGTGGACTCTTATTCATCTTCATGGGTTAAGTTTTATCAAGCGGTGAGAG 859
Query 839 GGACATTGGAGACAGAGGATATCTTTGTGACA---GACAGTTTACTCACATGCTCATAGT 895
|||||||||||||||||||||| ||||| ||| ||| ||||| |||||||||||||||
Sbjct 860 GGACATTGGAGACAGAGGATATGTTTGTAACAACAGACTGTTTAGTCACATGCTCATAGT 919
Query 896 GGAAGTAGAGTTGTTATACACATACTCAAGGTCACACTTCTCAGGTGTATATAGTTTT-A 954
||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 920 GGAAGTAGAGTTGCGATATAGACACTCAAGGTCACACTTCTCAGGTGTATATAGTTTTTA 979
Query 955 CATTGAAGGTTTTATATATATGAGTAGATCTGGTTGACTTAATTCTTGGGAAACCTAGAA 1014
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CATTAAAGGTTTCATATATATGAGTAGATCTGGTTGACTTAATTCTTGGGAAACCTAGAA 1039
Query 1015 CTGTTATGTTGTTCCAAAAGCTTTATACAACGTAATCAATACAATGAACTTTTGTCTTTA 1074
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1040 TTGTTATGTTGTTCCAAAAGCTTTATACAACGTTATCAATACAATGGAGTTTTGTCTTTA 1099
Query 1075 TGATTATGTGAAACAGTAATATTACTCAGT 1104
||||||||||||||||||||||||||||||
Sbjct 1100 TGATTATGTGAAACAGTAATATTACTCAGT 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5