BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471832
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16360.1 | Symbols: | LEM3 (ligand-effect modulator 3) fami... 1657 0.0
AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1... 846 0.0
> AT1G16360.1 | Symbols: | LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein | chr1:5593301-5595179 REVERSE
LENGTH=1203
Length=1203
Score = 1657 bits (897), Expect = 0.0
Identities = 1055/1130 (93%), Gaps = 15/1130 (1%)
Strand=Plus/Plus
Query 1 AAACCTAATCTGTTGGCTGAA-TTTGCTTCATTAGATTCAAGATTTACCCAACAGGAGCT 59
|||| |||| |||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 13 AAACATAATTTGTTGGCT-AACTTTGCTTCATCAGATTCAAGATTTACCCAACAGGAGCT 71
Query 60 TCCAGCATGCAAACCCATTCTTACTCCAAAATGGGTGATTCTGACTTTTCTTGTCTCAGG 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 72 TCCAGCATGCAAACCAATTCTTACTCCAAAATGGGTGATTCTGACTTTTCTTGTCTC-GG 130
Query 120 G-GTTGTCTTTATTCCTCTTGGAGTGATTTGCCTATTTGCTTCTCAGGGTGTCATCGAAA 178
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 131 GTGTTGTCTTTATTCCTCTGGGAGTGATTTGTCTATTTGCTTCTCAGGGTGTCATCGAAA 190
Query 179 TTGTTTATCGATATGACATAGACTGCATTCCATTATCCTCTAGGGACAACAAAGTCAGAT 238
||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 191 TTGTTGATCGATATGACACAGACTGCATTCCATTATCCTCTAGGGATAACAAAGTCCGAT 250
Query 239 ACATACAGGGCTTAGAAGATAAGAGGTGTAACAGAACAATAATGGTGACAAAAACTATGA 298
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 251 ACATACAGGGCTTGGAAGATAAGAGGTGTAACAGAACAATAACGGTGACAAAAACTATGA 310
Query 299 AGAATCCGGTGTATGTATATTACCAGCTTGAGAACTATTACCAAAACCATCGACGGTATG 358
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 311 AGAATCCGGTCTACGTATATTATCAGCTAGAGAACTATTACCAAAACCATCGACGGTATG 370
Query 359 TGAAAAGTCGACAAGATGGACAATTGAGAAGTCCGAAAGATGAGCACGATGTGAAATCAT 418
||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||
Sbjct 371 TGAAAAGTCGACAAGATGGACAACTGAGAAGTCCAAAAGATGAACACGAAACCAAATCAT 430
Query 419 GTGCGCCC-GAGGATACTA-TAGATGGTGAACCCATTGTTCCTTGTGGTCTTGTTGCTTG 476
|||| ||| |||||||| | ||| |||| |||| ||||||||||||||||||||||||||
Sbjct 431 GTGC-CCCGGAGGATAC-ACTAGGTGGTCAACCTATTGTTCCTTGTGGTCTTGTTGCTTG 488
Query 477 GAGTTTGTTCAATGATACTTATGACTTCACTAGAAACAATCAAAAACTCCCTGTGAATAA 536
|||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 489 GAGTTTGTTCAATGATACTTATGATTTCACTAGAAACAACCAAAAACTTCCAGTGAATAA 548
Query 537 GAAAGGCATCTCATGGAAGAGTGATAGAGAATCAAAGTTTGGTAAAAATGTCTTCCCGAA 596
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 GAAAGACATCTCGTGGAAGAGTGATAGAGAATCAAAGTTTGGTAAAAATGTCTTCCCAAA 608
Query 597 AAATTTCCAGAAAGGATCTCCCATCGGCGGTAAAAGTCTTGATCCTGATGTTCCATTAAG 656
|||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||
Sbjct 609 AAATTTCCAGAAAGGATCTCTCATCGGCGGTAAAAGTCTTGATCAAGATATTCCATTGAG 668
Query 657 TGAACAAGAAGATCTAATTGTCTGGATGCGAACTGCGGCTCTACCAACATTTAGAAAGCT 716
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 669 TGAGCAAGAAGATCTAATTGTCTGGATGCGAACCGCGGCTTTACCAACATTTAGAAAGCT 728
Query 717 GTACGGTAAAATAGATACTGATCTTCAAGCCGGAGATACGATAAAGGTCTTGTTACAGAA 776
||| || |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 729 GTATGGCAAAATAGACACTGATCTTCAAGCTGGAGATACGATAAAGGTCTTGTTGCAGAA 788
Query 777 CAATTACAACACTTATAGCTTCAAT-GGAAAGAAGAAGCTTGTGCTCTCTACCACTAGCT 835
|||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||
Sbjct 789 TAATTACAACACTTATAGCTTTAATGGGAAA-AAGAAGCTTGTGCTATCTACCACTAGCT 847
Query 836 GGCTCGGTGGAAGGAATGATTTCCTTGGGATTGCGTATTTGACTGTTGGTAGCATATGCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GGCTCGGTGGAAGGAATGATTTCCTTGGGATTGCGTATTTGACTGTTGGTAGCATATGCT 907
Query 896 TGTTCTTGGCTGTTTCCTTCTCTGTCTTGTATCTAGCAAAACCAAGGCAATTGGGAGATC 955
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 908 TGTTCTTGGCTGTTTCCTTCTCCGTCTTGTATCTAGCAAAACCAAGGCAACTGGGAGATC 967
Query 956 CATCGTACTTGTCATGGAACAGAAGTGCTGGAGGTGGACGATGATAAGAGTTGTTTTAAG 1015
|||||||||||||||||||||||||||||||||||||| ||||||| || || | |||||
Sbjct 968 CATCGTACTTGTCATGGAACAGAAGTGCTGGAGGTGGAAGATGATAGGA-TTCTCTTAAG 1026
Query 1016 CTCTTGTTTGTTGT-TTCTGGGATCTGTCACTTACTTCTCCTTCTATTGGTAAATAAATT 1074
|||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1027 CTCTTGTTTGTTGTATT-TGGGATCTGTCACATACTTCTCCTTCTTTTGGTAAATAAATT 1085
Query 1075 CCCTATGAGAATAGATTTTTACCGTTTATGAGAAAA-ATTATGTATAGAC 1123
| |||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1086 CACTATGAGAATAGATGTTTACCGTTTATGAGAAATTAT-ATGTATAGAC 1134
> AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:29887692-29890145
FORWARD LENGTH=1433
Length=1433
Score = 846 bits (458), Expect = 0.0
Identities = 801/967 (83%), Gaps = 22/967 (2%)
Strand=Plus/Plus
Query 35 ATTCAAGATTTACCCAACAGGAGCTTCCAGCATGCAAACCCATTCTTACTCCAAAATGGG 94
|||| || ||||| || || ||||||||||| ||||| || ||||||||||||| |||||
Sbjct 228 ATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCCAAGATGGG 287
Query 95 TGATTC-TGACTTTTCTTGTCTCAGGGGTTGTCTTTATTCCTCTTGGAGTGATTTGCCTA 153
||| || |||| ||||||||| | ||||||||||| ||||| ||||||||||| ||| ||
Sbjct 288 TGA-TCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGATCTGCTTA 346
Query 154 TTTGCTTCTCAGGGTGTCA-TCGAAATTGTTTATCGATATGACATAGACTGCATTCCATT 212
|||||||||||||| || | |||| |||||| |||||||||||| |||||| ||||||
Sbjct 347 TTTGCTTCTCAGGGAGT-AGTCGAGATTGTTGATCGATATGACACAGACTGTATTCCAAC 405
Query 213 ATCCTCTAGGGACAACAAAGTCAG-ATACATACAGGGCT-TAGAAGATAAGAGGTGTAAC 270
||| ||||| |||||| ||| | ||||||||||| | || |||||||| |||||
Sbjct 406 ATCTTCTAGAAACAACATGGTC-GCTTACATACAGGG-TGAAGGAGATAAGATCTGTAAG 463
Query 271 AGAACAATAATGGTGACAAAAACTATGAAGAATCCGGTGTATGTATATTACCAGCTTGAG 330
|||||||||| |||||||||| |||||||| |||| || |||||||| ||||| ||||||
Sbjct 464 AGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACTTGAG 523
Query 331 AACTAT-TACCAAAACCATCGACGGTATGTGAAAAGTCGACAA-GATGGACAATTGAGAA 388
|| | | |||||||||||| |||||||||||||||||||| || |||| |||| | ||||
Sbjct 524 AA-TTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGA-AACGATGCACAACTAAGAA 581
Query 389 GTCCGAAAGATGAGCACGATGTGAA-ATCATGTGCGCCCGAGGATACTATAGATGGTGAA 447
|||| ||||| ||||| |||||||| | | ||||| || ||||||| | | | ||| |||
Sbjct 582 GTCCAAAAGAAGAGCATGATGTGAAGA-CCTGTGCACCTGAGGATAATGTGGGTGGAGAA 640
Query 448 CCCATTGTTCCTTGTGGTCTTGTTGCTTGGAGTTTGTTCAATGATACTTAT-GACTTCAC 506
|| ||||| || ||||||||||||||||||||||||||||| ||||||||| | ||| |
Sbjct 641 CCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTATAG-CTTTTC 699
Query 507 TAGAAACAATCAAAAACTCCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGATAGAGA 566
||||| | ||| |||| | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 700 AAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAGA 759
Query 567 AT-CAAAGTTTGGTAAAAATGTCTTCCCGAAAAATTTCCAGAAAGGATCTCCCATCGGCG 625
| ||| |||||| |||||||||||||| |||||||| ||||||||| | || || ||||
Sbjct 760 AAACAA-GTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818
Query 626 GTAAAAGTCTTGATCCTGATGTTCCATTAAGTGAACAAGAAGATCTAATTGTCTGGATGC 685
|| || |||| || | | || || ||||| |||||||| || || ||||||||||
Sbjct 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878
Query 686 GAACTGCGGCTCTACCAACATTTAGAAAGCTGTACGGTAAAATAGATACTGATCTTCAAG 745
|||| |||||| | ||||| ||||| |||||||| || || || || || || || || |
Sbjct 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938
Query 746 CCGGAGATACGATAAAGGTCTTGTTACAGAACAATTACAACACTTATAGCTTCAATGGAA 805
| || ||||| |||| ||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998
Query 806 AGAAGAAGCTTGTGCTCTCTACCACTAGCTGGCTCGGTGGAAGGAATGATTTCCTTGGGA 865
|||||||||| ||||| || || |||||||||||||| ||||||||||||||||| ||||
Sbjct 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058
Query 866 TTGCGTATTTGACTGTTGGTAGCATATGCTTGTTCTTGGCTGTTTCCTTCT-CTGTCTTG 924
|||| ||| ||||||| || || || |||||||||||||||||| | || | | || |||
Sbjct 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATT-TGCCGTATTG 1117
Query 925 TATCTAGCAAAACCAAGGCAATTGGGAGATCCATCGTAC-TTGTCATGGAACAGAAGTGC 983
||||||| || ||||||||| | ||||| || |||||| || || ||||||||||||||
Sbjct 1118 TATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTT-TCGTGGAACAGAAGTGC 1176
Query 984 TGGAGGT 990
|||||||
Sbjct 1177 TGGAGGT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5