BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471833
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16370.1 | Symbols: ATOCT6, OCT6 | organic cation/carnitine ... 1869 0.0
AT1G79410.1 | Symbols: AtOCT5, 5-Oct | organic cation/carnitine... 625 5e-178
> AT1G16370.1 | Symbols: ATOCT6, OCT6 | organic cation/carnitine
transporter 6 | chr1:5596694-5598447 FORWARD LENGTH=1754
Length=1754
Score = 1869 bits (1012), Expect = 0.0
Identities = 1165/1237 (94%), Gaps = 18/1237 (1%)
Strand=Plus/Plus
Query 1 GAAACTAAACAATAATGGATGATCC---ATCAGAACCATTGTTGTCTCATTTCGCCAATG 57
|||||||||| ||||||| |||||| |||||||||||||||||||||| || || |||
Sbjct 55 GAAACTAAACGATAATGGCTGATCCAATATCAGAACCATTGTTGTCTCATCTCACCGATG 114
Query 58 ATTCTGGAGTCAACGACAAAA-C--------AGCATTGACTTTCGACAAGATCGTCGAAC 108
|||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 115 ATTCTGGAGTCAACGAAAAAACCAGATTAGAAGCATTGACTTTCGACAAGATCGTCGAAC 174
Query 109 AGAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATATCCCTGGTTGGACTCGCTT 168
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 175 AAAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATTTCCCTCGTTGGACTAGCTT 234
Query 169 TGCTCTTCGATGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 228
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGCTCTTCGACGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 294
Query 229 ACTGTCTTAACCACACGATTTGTGATCCTTCAGCTTCCGACATCTGCAATCTTCCAAGAT 288
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 295 ACTGTCTTAACCACACGATCTGTGATCCTTCAGCCTCCGACATCTGCAAGCTTCCAAGAT 354
Query 289 CAGCTTGGGAATGGGACGGTGGATCCAAGGGCAAATCCGTCATTTCTGAATTCGGCCTCG 348
|||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||
Sbjct 355 CAGCTTGGGAATGGGACGGTGGCTCCCAGGGCAAATCCGTCATTTCCGAATTTGGCCTCG 414
Query 349 AGTGCTCGAGGTCTTTACTCAGAGGTATGCCTAGTTCCGCTTTCTACATCGGTGCCATTG 408
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 AGTGCTCGAGCTCTTTACTCAGAGGTATGCCTAGTTCTGCTTTCTACATCGGTGCCATTG 474
Query 409 TTGGAGGGTTTTTTCTAGCTTTGATCCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTG 468
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 TTGGAGGGTTTTTTCTTGCTTTGATTCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTT 534
Query 469 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTGTGTTATCTTCTCAACCAATATAT 528
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 535 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTCTGTTATCTTCTCAACCAATGTAT 594
Query 529 GGATTTATACATTCCTAAAGTTTTTCATCAGATTTTCGCGATCACAGACCTGGTCATACG 588
|||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 595 GGATTTATACATTCCTTAAGTTTATCATTGGATTTTCGCGATCACAGACCTGGTCATACG 654
Query 589 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCTAGAGCTACAATGATTC 648
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 655 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCGAGAGCTACGATGATTC 714
Query 649 CATTTACCCTATTTGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTACCTTGCTCAAG 708
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 715 CATTTACCCTATTCGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTTCCTTGCACAAG 774
Query 709 ATTCTTCATGGAGATATCTCTATCTATACACATCTGTTCCAGCGATATTTTACTGTATCT 768
||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 775 ATTCTTCATGGAGATATCTATATCTATACACATCAGTTCCAGCGGTATTTTACTGTATCT 834
Query 769 TCCTCTACCTCTTTGCACTCGAATCACCTCGGTGGCTTCACATGCAAGGAAATGATAAAG 828
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 835 TCCTCTACCTCTTCGCACTCGAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAG 894
Query 829 AAGCCATTGATGTTCTCACAAAGATGTCGCCGAAG-AACAAAGCTTATTTGGAATCAGTG 887
|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 895 AAGCCATTGATGTTCTCACAAAGATGTCACCGAAGGAA-AAAGCTTATTTGGAATCAGTG 953
Query 888 GTTTCTAAGTTACCCCACGAGCAAGAAAACTTTGAACAAGTGCCAACTTACTCTATTAAG 947
|||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 954 GTTTCTAAGTTACCCCTCAAGCAAGAAAACTTTGAACAAGCGCCAACTTACTCGATTAAG 1013
Query 948 GACTTCTTCTTCCGAAAATGGGCTTTTCAG-AGGATTTTAGTTGTTATGATCATAATGTT 1006
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1014 GACTTCTTCTTCCGAAAATGGGCTTTTC-GTAGGATTTTAGTTGTTATGATCATAATGTT 1072
Query 1007 TGGGTTGGGAATATCGTATTACGGTGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1066
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 TGGGTTGGGAATATCGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1132
Query 1067 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGCTGCCTACTTTCGTCATCACTCCAAT 1126
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||
Sbjct 1133 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGAT 1192
Query 1127 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTAGTGAATACCTTACTTGGTGGGGC 1186
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1193 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGC 1252
Query 1187 ATC-GGGAGTGCTCTGTTTTGTTCTCAGCATCCTCGG 1222
||| ||| ||||||||||| ||||||||||| |||||
Sbjct 1253 ATCAGGG-GTGCTCTGTTTCGTTCTCAGCATTCTCGG 1288
Score = 678 bits (367), Expect = 0.0
Identities = 416/440 (95%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 1218 CTCGGAACATTCTTCTGCGCAAGGATCGGATTCAACCTTATGGCAGTTTTTATGGTTGAA 1277
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1317 CTCGGAACATTCTTCTGCGCTAGAATCGGATTTAACCTTATGGCAGTTTTTATGGTTGAA 1376
Query 1278 ATGTTTCCAACTTGTGTGAGAAGTTCGGCAACAATGATGTTTAGACAGGCTCTTGTTGTT 1337
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1377 ATGTTTCCAACTTGTGTGAGAAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTT 1436
Query 1338 GGAGGAGCTTGTTGTCCGTTAATTTCTTCGATTGGAAGATACATTCCGTCAGTATCGTTT 1397
|||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||
Sbjct 1437 GGAGGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT 1496
Query 1398 GCGATTTTTGGAATTGCAATGTCAGGTTTAGGATTGTTCGTTTTGATTCTGCCTGAGACA 1457
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1497 GCGATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACA 1556
Query 1458 AAAGGTTTGAGTCTCTGCGACTCAATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAC 1517
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1557 AAAGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAT 1616
Query 1518 ACTAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTTAAACATTCTCCATTTTCAT 1577
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1617 ACCAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTCAAACATTCTCCATTTTCAT 1676
Query 1578 ATGTTTTCAATTCTGTGATGTTTGTCTTGATTTTATAAGAGTAAAATATTTGAAGTTTTG 1637
|||||||| ||| |||||||||||||||||||||| | ||||||| ||||| ||||| ||
Sbjct 1677 ATGTTTTCTATTATGTGATGTTTGTCTTGATTTTA-A-GAGTAAACTATTTTAAGTTGTG 1734
Query 1638 TTAAGTAAAAACTAAAGAGT 1657
| ||||||||||||||||||
Sbjct 1735 TCAAGTAAAAACTAAAGAGT 1754
> AT1G79410.1 | Symbols: AtOCT5, 5-Oct | organic cation/carnitine
transporter5 | chr1:29867880-29869633 REVERSE LENGTH=1754
Length=1754
Score = 625 bits (338), Expect = 5e-178
Identities = 886/1146 (77%), Gaps = 55/1146 (5%)
Strand=Plus/Plus
Query 85 TGACTTTCGACAAGATCGTCGA-ACAGAGTC-TATCAGATTTCGGATTCTGGCAATTTTT 142
||||||||||||||||| |||| | | || | | || ||||||||||||| ||| || ||
Sbjct 117 TGACTTTCGACAAGATCCTCGAGA-AAAG-CTTGTCTGATTTCGGATTCTCGCAGTTCTT 174
Query 143 CCAGATA-TCCCTGGTTGGACTCGC-TTTGCTCTTCGA-TGCTCAGCAGATATTCATCAC 199
|||||| | || ||||| ||||| | | ||| || | |||||||||||||||||||
Sbjct 175 ACAGATAGT-TCTCGTTGGGCTCGCGCTAAC-CTTTGACT-CTCAGCAGATATTCATCAC 231
Query 200 CGTGTACACAGATGCTTATCCCACGTGGCACTGTCTTAACCACACGATTTGTGATCCTTC 259
||| | ||||||||| ||||||||||||||||||||| |||||||||| || |||| |
Sbjct 232 CGTCTTCACAGATGCATATCCCACGTGGCACTGTCTTGACCACACGATCTGCAATCCGGC 291
Query 260 AGCTTCCGACATCTGCAATCTTCCAAGATCAGCTTGGGAATGGGACGGTGGATCCAAGGG 319
| || |||| ||||| || |||| | ||||||||||| ||||||||||| | ||| ||
Sbjct 292 AACTACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGATTGGGACGGTGGTTTCAAAGG 351
Query 320 CAAATCCGTCATTTCTGAATTCGGCCTCGAGTGCTCGAGGTCTTTACTCAGAGGTATGCC 379
||||| |||||||| || |||| ||||||||||| || || || |||||| || | ||
Sbjct 352 TAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCCAGCTCCTTCCTCAGAAGTCTACC 411
Query 380 TAGTTCCGCTTTCTACATCGGTGCCATTGTTGGAGG-GTTTTTTCTAGCTTTGATCCCAG 438
|||||| |||| || | ||| | || ||||| || || ||| | ||| ||||||| |
Sbjct 412 TAGTTCAACTTTTTATGTGGGTTCTATCGTTGGTGGAGTCGTTT-TGGCTATGATCCCTG 470
Query 439 ACGATTCCTTGGGTCGCAAGAAACTAGTTGTGTTCTCAACCTTT-GCAATGTCAATCACT 497
||| ||||||||| || ||| |||| || | ||||| | ||| ||||||||| |||||
Sbjct 471 ACGGTTCCTTGGGACGGAAGCAACTTCTTTTTTTCTCGA-GTTTCGCAATGTCACTCACT 529
Query 498 TCAATCTGTGTTATCTTCTCAACCAATATATGGATTTA-TACATTCCTAAAGTTTTTCAT 556
||||| | || |||| || |||| |||||||| || | | ||| |||||||| | ||
Sbjct 530 GGAATCTCTATTTTCTTATCCTCCAACATATGGATCTACT-CCTTCTTAAAGTTTGTGAT 588
Query 557 CAGATTTTCGCGATCACAGACCTGGTCATACGCGTTGGTTCTCATCAGTGAGCGAGTCTC 616
| |||| |||| || |||||| || |||||||||| ||||| || ||||||||| | ||
Sbjct 589 CGGATTCGCGCGTTCTCAGACCGGGACATACGCGTTAGTTCTGATAAGTGAGCGAATTTC 648
Query 617 CACCAGATGGAGACCTAGAGCTACAATGATTCCATTTACCCTATTTGTTTTAGGGTTTAT 676
||||| ||||||||| ||||||| ||| |||| ||||| || ||||| |||||||| ||
Sbjct 649 CACCAAATGGAGACCGCGAGCTACTATGGTTCCGTTTACTCTGTTTGTGTTAGGGTTCAT 708
Query 677 GTCGTTGTCTGGAATCGCTTACCTTGCTCA-AGATTCTTCATGGAGA-TATCTCTATCTA 734
|||||||||||||||||||||||||| || | | |||| |||| | | ||||||||||
Sbjct 709 GTCGTTGTCTGGAATCGCTTACCTTG-TCCGACACGCTTCTTGGAAAGT-TCTCTATCTA 766
Query 735 TACACATCTGTTCCAGC-G-ATATTTTACTGTATCTTCCTCTACCTCTTTGCACTCGAAT 792
| |||||| |||| || | | || || |||| ||| |||| ||||||| || || |
Sbjct 767 TGCACATCCATTCCTGCAGGA-ATCC-ACAGTATTTTCATCTATTTCTTTGCCCTAGAGT 824
Query 793 CACCTCGGTGGCTTCACATGCAAGGAAATGAT-AAAGAAGCCATTGATGTTCTCACAAAG 851
|||| || ||||| || || |||| || || |||||||||||||| || |||| || |
Sbjct 825 CACCGCGTTGGCTCCATTTGGAAGGGAA-GAACAAAGAAGCCATTGAAGTGCTCA-AACG 882
Query 852 -ATGTCGCC-GAAGAACAAAGCTTATTTGGAATCAGTGGT-TTCTAAGTTACC-CCACGA 907
|| || || | | || | || ||| |||||||| || | ||| | ||||| ||| |
Sbjct 883 GATTTCACCTGCA-AATAGAGGTTACTTGGAATCCGTA-TCTTCGAGGTTACGTCCA--A 938
Query 908 GCAAGAAA-ACTTTGAACAAG-TGCCAA-CTTACTCTATTAAGGACTTCTTC-TTCCGAA 963
|||||| ||| || ||| | | || || |||| || || ||||| ||| || ||
Sbjct 939 --AAGAAACACTA-GAGCAAACTTC-AAGCT-ACTCAATCAAAGACTTGTTCATTAT-AA 992
Query 964 AATGGGCTTTTCAGAGGATTTT-AGTTGTTATGATCATAATGTTTGGGTTGGGAATATCG 1022
|||||||||||| || || | | ||||||||||||||||||||||||||||||| |||
Sbjct 993 AATGGGCTTTTC-GAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCG 1051
Query 1023 TATTACGGTGTTCCTTTAGCAGCTAGAGACATAGACGTCAACATCTACT-TGAGTGAAAC 1081
||||| || ||||| ||||| | |||||||||| | || ||||| || | |||| ||| |
Sbjct 1052 TATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTA-TATGAGCGAAGC 1110
Query 1082 CCTAAATGC-ATTGGTGGAGCTGCCTAC-TTTCGTCATCACTCCAATCTTATTGGAG-AG 1138
|||||| || || ||||||| | || || ||| || | || || ||||| | ||| |
Sbjct 1111 CCTAAACGCCAT-GGTGGAGTTACCAACATTT-GTTGTTACACCGATCTTGCTCGAGCA- 1167
Query 1139 ATTCAACAGAAGAAGCTCTGTTCTAGTGAATACCTTACTTGGTGGGGCATCGGGAGTGCT 1198
||||| ||| ||||||||||| || || ||| |||| |||| || ||||| ||||||||
Sbjct 1168 ATTCAGCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCT 1227
Query 1199 CTGTTT 1204
||||||
Sbjct 1228 CTGTTT 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5