BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471835
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16390.1 | Symbols: ATOCT3, 3-Oct | organic cation/carnitine... 2527 0.0
> AT1G16390.1 | Symbols: ATOCT3, 3-Oct | organic cation/carnitine
transporter 3 | chr1:5602873-5604663 FORWARD LENGTH=1791
Length=1791
Score = 2527 bits (1368), Expect = 0.0
Identities = 1667/1803 (92%), Gaps = 54/1803 (3%)
Strand=Plus/Plus
Query 1 AAATCAATTCAAACATAAAATTAAGTACAAAAGAAAACCCTATCTCTTCCTATATATGGC 60
||||||| |||||||| || |||| ||| |||||||||||||||||||||||||||
Sbjct 1 AAATCAAGTCAAACAT--AA--AAGT---AAACAAAACCCTATCTCTTCCTATATATGGC 53
Query 61 CGACTCGACACGGCCGCTTCTCTCCGATTCCAACTCGTCCGAGTCAAATCTTCCACCACC 120
||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 54 CGACTCGACTCGGCCGCTTCTCTCAGATTTCAACTCGTCCGAGTCAAATCTTCCGCCACC 113
Query 121 AAAATCCCTTGACGAGACGATAGAGCAATGCATCGGAAACTTCGGGTGGGCACAATTCCT 180
|| ||||||||| ||||||||||||| |||||| ||| |||||||||||||||| || ||
Sbjct 114 AAGATCCCTTGAGGAGACGATAGAGCGATGCATTGGAGACTTCGGGTGGGCACAGTTTCT 173
Query 181 CCAAGCCGCTTTAGTCTCATTCGCTTGGGTCTTCGACGCTCAACAAACATTCATCACTGT 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 174 CCAAGCCGCTTTAGTCTCATTCGCTTGGTTCTTCGACGCTCAACAAACATTCATCACCGT 233
Query 241 CTTCACCGACTCACAACCCACATGGCACTGT-ACCGAA-TCGGAACGAGTCGACTCAGTA 298
|||||||||||||||||||| ||||||||| | | || ||||| |||||||||||||||
Sbjct 234 CTTCACCGACTCACAACCCATGTGGCACTGTGA-C-AACTCGGACCGAGTCGACTCAGTA 291
Query 299 TGCAACACGTCATCCTCCAACCTCTGCACCTTACCCAACAAAACCTGGTCTTGGGACTTC 358
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 292 TGCAACACATCCTCCTCCAACCTCTGCACCTTACCCAACCAAACCTGGTCTTGGGACTTG 351
Query 359 AACCCTCACGTGTCAATCATTTCCGAGTGGGGGCTACAATGCGCCGGCTCGTTCCTCAAG 418
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AACCCACACGTTTCAATCATTTCCGAGTGGGGGCTACAATGCGCCGGCTCGTTCCTCAAG 411
Query 419 GGGTTGCCTGCAAGCTCCTTTTTCCTTGGCTGTCTAATCGGCGGCTTAGTTCTTTCTACA 478
|| || ||||||||||| || ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 412 GGATTTCCTGCAAGCTCATTCTTCCTCGGCTGTCTAATCGGCGGCTTAGCTCTCTCTACA 471
Query 479 CTCGCCGACTCATCGCTCGGTCGTAAGAACATGCTCTTGTTGTCGTGTCTCATAATGTCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTCGCCGACTCATCGCTCGGTCGTAAGAACATGCTCTTGTTGTCGTGTCTCATAATGTCT 531
Query 539 CTTTCTTCGATGTTAACAGCTTTCTCAACGAGCATTTGGGTTTATGCGTTTTTGAGATTC 598
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCTCTTCCATGTTAACAGCTTTCTCAACGAGCATTTGGGTTTATGCGTTTTTGAGATTC 591
Query 599 TTGAACGGGTGTGGCCGAGCCACGATCGGGACTTGCGCGCTCGTTTTATCAACGGAGTTA 658
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 592 TTGAACGGGTGTGGCCGAGCCACGATCGGGACTTGCGCGCTTGTTCTATCAACGGAGTTA 651
Query 659 GTCGGTAAAAAATGGCGAGGAAAAGTCGGTGCTATGGGTTTCTTTTGCTTCACGTTAGGG 718
||||||||||||||||||||| |||| || || ||||||||||||||||||||| |||||
Sbjct 652 GTCGGTAAAAAATGGCGAGGACAAGTTGGAGCGATGGGTTTCTTTTGCTTCACGCTAGGG 711
Query 719 TTTTTATCGCTGCCGATGTTAGGTTACATTAAT-AACGGGAATTCGTGGAGGTATCTTTA 777
||||||||||| ||||||||||||||||||||| || |||||||| |||||| |||| ||
Sbjct 712 TTTTTATCGCTTCCGATGTTAGGTTACATTAATGAA-GGGAATTCTTGGAGGAATCTGTA 770
Query 778 TGTTTGGACATCGATACCGACTTTAATCTATTGCTGTTTAATTCGGATTTTCGTCAGGGA 837
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 771 TGTTTGGACATCGATACCGACTTTAATCTATTGCTGTTTAGTTCGGAGTTTCGTCCGGGA 830
Query 838 ATCTCCTAGATGGCTTATCGTAAAGGGTCGTAAAGAAGAAGCCGTCTCAATTCTCCAAAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ATCTCCTAGATGGCTTATCGTAAAGGGTCGTAAAGAAGAAGCCGTCTCAATTCTCCAAAG 890
Query 898 CATTGCTTCTAATGCAATCACTATGAGCTTCACGAACTTATGTTTTGATA-TAGAAGAGG 956
||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| | |
Sbjct 891 CATTGCTTCTAATGCAATCACTATGAGCTTCACAAACTTATGTTTTGA-AGTAGAAAATG 949
Query 957 ATCAATCCAAGTCAAATCCTGATGTTTACGACGCGTTAAAGATCTTGGTGAGGAAAAGTT 1016
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 950 ATCAATCCAAGTCAAATCCTGATGTTTATGATGCGTTAAAGATCTTGGTGAGGAAAAGTT 1009
Query 1017 GGTCGTTTAGGAGATTATTAGCGGCAATGGTGGTTGGATTTGGTATCGGTATGGTTTATT 1076
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1010 GGTCGTTTAGAAGATTATTAGCGGCAATGGTGGTTGGATTCGGTATCGGTATGGTTTATT 1069
Query 1077 ACGGAATGCCATTAGCTTTAACGAATCTAAACTTCAATCTTTACTTAGGTGTTGTATTCA 1136
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1070 ATGGAATGCCATTAGCTTTAACGAATCTAAACTTCAATCTTTACTTAGGGGTTGTGTTCA 1129
Query 1137 ACGCCTTGTCTGAGTTCCCAGCTTTTCTGATAACGTTTTTCTTCATTGATAAAATCAATA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ACGCCTTGTCTGAGTTCCCAGCTTTTCTGATAACGTTTTTCTTCATTGATAAAATCAATA 1189
Query 1197 GAAGAGATGCGTTGATCGGATTTACAGCTCTAAGTGGAATCTCTAGCGCTCTGATCGCGG 1256
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1190 GGAGAGATGCGTTGATCGGATTTACAGCTCTAAGTGGAATCTCTAGCGCTCTAATCGCGG 1249
Query 1257 TGTTAGGACAACAACTAGGGGCATTACAGATTGTGTTAGAGCTCGTTTCGTTTTTCAGTG 1316
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1250 TGTTAGGACAACAACTAGGGTCATTACAGATTGTGTTAGAGCTCGTTTCGTTTTTCAGCG 1309
Query 1317 CGTGCACCGCATTTAACATGACGCTTATATACACAATTGAGATGTTTCCGACATGTGTGA 1376
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1310 CATGCACCGCATTTAACATGACGCTTATTTACACAATTGAAATGTTTCCGACATGTGTGA 1369
Query 1377 GGAACTCGGCGATTGCGATGGTGAGGCAGGCGCTGGTGTTTGGCGGCGTTTTTAGTCCAG 1436
|||||||||||||| ||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 1370 GGAACTCGGCGATTTCGATGGTGAGGCAAGCATTGGTGTTTGGCGGCGTGTTTAGTCCAG 1429
Query 1437 TGATGGTTGCTGCTGGTCGCGAAAATCAGTTTTGGTCGTATGGGTTGTTTGGTTTGGTCA 1496
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1430 TGATGGTTGCTGCTGGTCGGGAAAATCAGTTTTGGTCGTATGGGTTGTTTGGTTTGATCA 1489
Query 1497 TAGCATTGTGTGGATTGTTTGTGTTTGGATTGCCGGAGACTAGAGGAAGTGTTCTATGCG 1556
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1490 TAGGATTGTGTGGATTGTTTGTGTTTGGATTGCCGGAGACTAGAGGAAGTGTTTTATGCG 1549
Query 1557 ACACTATGGACGAGGAGGAGTATAAGACTTTGGCAAAGAGACAATTTATTGGTTGATA-- 1614
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1550 ACACTATGGACGAGGAGGAGTATAAGACTTTGGCAAAAAGACAATTTATTGGTTGATACT 1609
Query 1615 -G-T---GTTGTCTTTTGC---A--GGCT------T----A-----AA-CC-GTTTCGGT 1647
| | ||||||||||| | || | | | || || ||| ||||
Sbjct 1610 TGATACTGTTGTCTTTTGTTGTAATGGTTAAAAAGTTTGCAGGCTTAAACCAGTT-CGGT 1668
Query 1648 ATTGATTCAAATGCCATTCTGGTTTTAATACTTATGAAACCACGTACGGGTTAACTCCTT 1707
|||||||||||| | |||||| ||||||||||||| |||||||| || ||||||||||
Sbjct 1669 ATTGATTCAAAT-CAATTCTGATTTTAATACTTAT-AAACCACG---GG-TTAACTCCTT 1722
Query 1708 GCATTACAAGTGACTGTCTCCTCTATGATACCGGACCATAAACCAAATTCATCCAACCAT 1767
||||| ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct 1723 ACATTATAAGTGACTGTCTCATCT--G-TACCGGACCATAAACCAAATTCAACCAACCAT 1779
Query 1768 AAT 1770
|||
Sbjct 1780 AAT 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5