BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471839
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16420.1 | Symbols: ATMC8, MC8 | metacaspase 8 | chr1:561215... 1718 0.0
AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase ... 108 2e-22
> AT1G16420.1 | Symbols: ATMC8, MC8 | metacaspase 8 | chr1:5612150-5613867
REVERSE LENGTH=1338
Length=1338
Score = 1718 bits (930), Expect = 0.0
Identities = 1164/1275 (91%), Gaps = 24/1275 (2%)
Strand=Plus/Plus
Query 1 ATAAAGGGAAAACAAAGGTTTAATTCATTCATTCGTCAATGGCGAAGAAAGCAGTTTTGA 60
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATAAAGAAAAAACAAAGGTATAATTCATTCATTCGTCAATGGCGAAGAAAGCACTTTTGA 60
Query 61 TAGGAATCAACTACCCAGGGACCGCGGTGGAGTTACGCGGCTGTGTCAACGACGTCCGCC 120
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 61 TAGGAATCAACTACCCAGGAACCGCGGTGGAGTTACGTGGCTGTGTCAACGACGTCCACC 120
Query 121 GGATGCAGAAATGCCTAATCGAACTTTACGGATTCGCTAACAAGGACATCACCATACTGA 180
|||||||||||||||||||||| |||||||| ||||| |||||||||||| |||| |||
Sbjct 121 GGATGCAGAAATGCCTAATCGAGCTTTACGGGTTCGCCAACAAGGACATCGTCATAATGA 180
Query 181 TCGACACAGATAAATCATGTATACAACCTACAGGCAAGAACATCCACGACGAA-TTGACT 239
| |||||||| |||||||||||||||||||| |||||||| ||| ||||||| | || |
Sbjct 181 TAGACACAGACAAATCATGTATACAACCTACGGGCAAGAATATCTGCGACGAACTGGA-T 239
Query 240 AGA-CTCATCGCATCAGGGCAATCTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGG 298
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 A-ATCTCATCGCATCAGGGCAATCTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGG 298
Query 299 CACGAGAATCCCGCCTGGGATAGGAGAATTAGGCGACTCTACAGGGTTTGACGAGTGTAT 358
|||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||||
Sbjct 299 CACGAGAATCCCTCCTGGGATAGAAGACTCAGAAGACCCTACAGGGTTTGACGAGTGTAT 358
Query 359 CACTCCTTGCGATATGAATCTAATTAAGGACCATG-ATTTTAGAGAAATGGTGTCACATG 417
|||||| ||||||||||||||||| |||||||| | | ||||||||||||||||||| ||
Sbjct 359 CACTCCGTGCGATATGAATCTAATAAAGGACCA-GCAATTTAGAGAAATGGTGTCACGTG 417
Query 418 TAAAAGAAGGCTGTCAATTGACGATAATCTCGGACTCTTGTCACAGTGGTGGTCTCATCG 477
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 TAAAAGAAGGTTGTCAGTTGACGATAATCTCGGACTCTTGTCATAGTGGTGGTCTCATCC 477
Query 478 AGGAAGTAAAGGAGCAGATTGGGGAAAGCCATGTGAAGCCGATCAATGAGGTAAAGGAGC 537
||||||||||||||||||| || ||||||||| |||||||| || || | || |||||||
Sbjct 478 AGGAAGTAAAGGAGCAGATCGGTGAAAGCCATATGAAGCCGGTCGATAAAGTTAAGGAGC 537
Query 538 AGATCGACGAAAGCCATGTGAAGCCGCCAAAACTTGGGATTGCTAGTTACTTGCTTAGCA 597
||||||| ||||||||| |||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 538 AGATCGAGGAAAGCCATATGAAGCAGCCAAAACTCGGGATTGCTAGTTACTTCCTTAACA 597
Query 598 TTGTGATGAATTTGTTAGCGACTTGTGGAATCTCAAAATCTCAGAGAGACCGTGGAGGTG 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTGTGATGAATTTGTTAGCGACTTGTGGAGTCTCAAAATCTCAGAGAGACCGTGGAGGTG 657
Query 658 GCCAAGAAAGCTTTAGCGGAGAGATAGAATTAGCGAGCGATTATGAAACGTTTGATATAA 717
|| ||||||||||||| |||||||||||||||| || || |||||| |||||||||
Sbjct 658 GCGAAGAAAGCTTTAGAGGAGAGATAGAATTAGAGAAAGAC---GAAACGCTTGATATAA 714
Query 718 AAACTAGATATCTACCTTTCGAAAGCTACGTAAGTCTTCTCAAGCAACAAACCGGGCAAA 777
|||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 715 AAACAAGATATCTACCTTTCGAAAGCTACTTAAGTCTTCTCAAGGAACAAACCGGGCAAA 774
Query 778 CCAATATCGAATCTCG-GAGAATCAGACAGACACTTCTCAAATTATTCGGTGAAGACTCA 836
||||||||||| || | |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 775 CCAATATCGAACCT-GTGAGAATTAGACAGACACTTCTCAAATTATTCGGTGAAGACCCA 833
Query 837 AGCCCGATTCATCAGAGAGGTTTAAGTGACCTAGGAAACTTCGATGTTAATGCAGGTGAT 896
||||||| || ||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 834 AGCCCGAATCGTCAGAGAGGTTTAAGTGACCTAGGAAACTGCGAGGTTGATGCAGGTGAT 893
Query 897 TCTGGAGCCCCAGGATCGATTGCCG--AC--A-AG-GGGATTCTGTTAAGTGGATGTCAA 950
|||||||| || ||| || ||||| || | | |||||||| |||||||||||||||
Sbjct 894 TCTGGAGCTTCAAGATTGAATGCCGTTACCGACAATGGGATTCTATTAAGTGGATGTCAA 953
Query 951 ACAGATCAGAGATCAGAGGATGTTTATGTGACAAGAACTGGAAAAGCTTATGGGGCATTC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 ACAGATCAGAGATCAGAGGATGTTTATGTGACAAGAACTGGAAAAGCTTATGGAGCATTC 1013
Query 1011 AGTGATGCGATTCAGACGATATTGTC-GACGCCGAGGAAGGAGAAGAAGAAGATTACGAA 1069
|||||||||||||||| ||||||||| | ||||||| ||||| |||||||||||||||||
Sbjct 1014 AGTGATGCGATTCAGATGATATTGTCCG-CGCCGAGAAAGGATAAGAAGAAGATTACGAA 1072
Query 1070 CAAAGAAGTGGTTTCCGAAGCTAGAGTGCTTCTCAAGAAACGGGGGTTTAGTCAACGACC 1129
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1073 CAAAGAATTGGTTTCCGAAGCTAGAGTGTTTCTCAAGAAACGGGGGTATAGTCAACGACC 1132
Query 1130 AGGCTTGTATTGTCATGACCGTTATGTTAATAAACCATTCATATGCTA--AAA-CACAAG 1186
||||||||||||||||||||||| |||| |||||||||| |||||||| ||| ||||||
Sbjct 1133 AGGCTTGTATTGTCATGACCGTTTTGTTGATAAACCATTTATATGCTACTAAAACACAAG 1192
Query 1187 AAGTTCATCTG-AAGACTTTTGTTTGATGGTGCATTTCAAGTTATTTCTTTTTGTGATTT 1245
||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1193 AAGTTCATCTGGAA-AGTTTTGTTTGATGGTGCATTTGAAGTTATTTCTTTTTGTGATTT 1251
Query 1246 AAGATTTTTATGTAG 1260
|||||||||||||||
Sbjct 1252 AAGATTTTTATGTAG 1266
Score = 69.4 bits (37), Expect = 8e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1260 GTCTCTCAGTGACTTGTGATTCAAGTAATATACAAtttttttt 1302
|||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1296 GTCTCTCAGTGACTTGTGATTCAAGTAATATACAGTTTTATTT 1338
> AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase
5 | chr1:29838653-29840137 FORWARD LENGTH=1302
Length=1302
Score = 108 bits (58), Expect = 2e-22
Identities = 358/495 (72%), Gaps = 51/495 (10%)
Strand=Plus/Plus
Query 36 TCAATGGCGAAGAAAGCAGTTTTGATAGGAATCAACTACCCAGGGACCGCGGTGGAGTTA 95
||||||||||||||||| || ||||| |||||||| ||||| || ||| || |||| ||
Sbjct 67 TCAATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGAACCAAGGCGGAGCTA 126
Query 96 CGCGGCTGTGTCAACGACGTCCGCCG-GA-TGCAGAAATGC-CTAATCGAAC--TTTACG 150
|| || || |||||||| ||||| | || |||| |||| | || | || | ||| |
Sbjct 127 CGGGGATGCGTCAACGATGTCCG--GAGAGTGCACAAAT-CTCTCGTGGATCGGTTT--G 181
Query 151 GATTC-GCTA-ACAAGGACATCACCAT-A-CTGATCGACACAGATAAATCATGTATA-C- 204
||||| | | | || |||||| | | | ||||| || || || | || | | | |
Sbjct 182 GATTCTCCGAGAGAA--ACATCA-C-TGAGCTGATTGATACTGACGAGTC-T-TCCACCA 235
Query 205 AACCTACAGGCAAGAACA-TCCACGACGAATTGACTAGACTC-A-TCGCATCAGGGCAAT 261
|||||||||| ||||| | || | | | |||| | || || | | | ||| | ||
Sbjct 236 AACCTACAGGGAAGAATATTCGAAG-GGCATTG--TTGAATCTAGTTGAATCCGCTAAAC 292
Query 262 CTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGGCACGAGAATCCCGCCTGG-GA-T 319
| || ||| |||| ||| | |||||||||||||| || ||||| | ||| | || || |
Sbjct 293 CGGGTGATGTTCTTGTCGTCCATTACAGTGGACACGGGACGAGGTTGCCGGC-GGAGACT 351
Query 320 AGGAGAATTAGGCGACT-CTACAGGGTT-TGACGAGTGTATCACTCCTTGCGATATGAAT 377
|||| | || ||| | ||| |||| ||| |||||||| |||||| |||||||||
Sbjct 352 -GGAG-A--AGACGA-TGATAC-TGGTTATGATGAGTGTATTGTTCCTTGTGATATGAAT 405
Query 378 CTAATTAAGGACCATGATTTTAGAGAAATGGT-GTCACATGTA--AAA-GAAGGCTGTCA 433
|| || | || |||| |||||||| | || | | | ||| ||| ||| || ||
Sbjct 406 CTTATCACCGATGATGAGTTTAGAGATCTTGTGGAGA-AAGTACCAAAGGAA-GC--ACA 461
Query 434 -ATTGACGATAATCTCGGACTCTTGTCACAGTGGTGGTCTCATCGAGGAAG-TAAAGGAG 491
||| || || ||||| ||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 462 CATT-ACAATCATCTCAGACTCTTGTCACAGTGGTGGTCTCATCGATGAAGCTAAAG-AG 519
Query 492 CAGATTGGGGAAAGC 506
||||| || || |||
Sbjct 520 CAGATCGGAGAGAGC 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5