BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471840
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:56158... 2084 0.0
AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-... 819 0.0
AT5G40030.1 | Symbols: | Protein kinase superfamily protein | ... 172 6e-42
> AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:5615815-5617672
FORWARD LENGTH=1566
Length=1566
Score = 2084 bits (1128), Expect = 0.0
Identities = 1244/1301 (96%), Gaps = 3/1301 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCACAAAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCAC 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 231 ATGAGCTCCCAAAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCAC 290
Query 61 ACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACGGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 350
Query 121 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTTTAT 180
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 351 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTAT 410
Query 181 CTTGTTGAACTCAAAGGCGCAAATCCGACTACATATTTCGCGATGAAAGTAATGGATAAG 240
||||||||||||||||| |||||||| || || ||||||||||||||||| ||||| |||
Sbjct 411 CTTGTTGAACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAG 470
Query 241 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCT 300
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 471 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCT 530
Query 301 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 590
Query 361 TGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAGCAACCT 420
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 591 TGCTTGGTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCC 650
Query 421 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTAGCGTTA 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 651 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTA 710
Query 481 GAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTT 540
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 711 GAGTACTTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTT 770
Query 541 CGAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CGAGACGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAC 830
Query 601 CCAACACTTGTCAAATCTTTCAACGGCGGCGGAACCACGGGAATCGTTGAAGACAATGCG 660
||||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||
Sbjct 831 CCAACACTTGTCAAATCTTTCAACGGCGGTGGAACCACCGGAATCATTGACGACAATGCG 890
Query 661 GCGGTCCAAGGATGTTACCAACCATCCACATTCTTCCCACGAATGCTCCAATCATCGAAG 720
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 891 GCGGTACAAGGATGTTACCAACCATCCGCATTCTTCCCACGAATGCTCCAATCCTCGAAG 950
Query 721 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCATTACCAGAACTCATGGCAGAGCCG 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCGTTACCAGAACTCATGGCAGAGCCG 1010
Query 781 ACGAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ACAAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 1070
Query 841 AAAAACGAAGGTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAG 900
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1071 AAAAACGAAGGTCACGGAAGCGCCGTCGATTGGTGGACGTTCGGGATATTCATCTACGAG 1130
Query 901 CTTCTTCATGGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTA 960
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1131 CTTCTTCATGGAGCAACACCATTTAAAGGACAAGGAAACAAAGCCACGCTTTATAATGTA 1190
Query 961 ATCGGACAACCTCTGAGATTCCCGGAATATTCTCAGGTTAGCTCAAAGGCAAAGGATTTA 1020
|||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1191 ATCGGACAACCTCTTAGATTCCCGGAATATTCTCAGGTTAGCTCGACGGCGAAGGATTTG 1250
Query 1021 ATCAAAGGTTTGTTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATCAAAGGTTTATTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1310
Query 1081 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACG 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACA 1370
Query 1141 CCGCCGCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAGAGAAGGAGTCT 1200
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1371 CCGCCACATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAGGAGAAGGAGTCT 1430
Query 1201 TTGCCGGCGGCGGCAACCGAAAAGAAGAGCAAAACGTGTGATGAAGCTCA---GAGCGGT 1257
|||||| |||||||||| |||||||||||||| | || |||||||||| | |||||||
Sbjct 1431 TTGCCGCCGGCGGCAACGGAAAAGAAGAGCAAGATGTTTGATGAAGCTAATAAGAGCGGT 1490
Query 1258 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCTATA 1298
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1491 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCCATA 1531
> AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-29812218
REVERSE LENGTH=1902
Length=1902
Score = 819 bits (443), Expect = 0.0
Identities = 1005/1265 (79%), Gaps = 84/1265 (7%)
Strand=Plus/Plus
Query 1 ATGAGCTCACA-AAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCA 59
||||||||| | |||||||| || || ||||| ||||| |||| |||||||||| ||
Sbjct 339 ATGAGCTCA-AGAAGCAACAGCATTGAGAGCACGTCCTC---TAATCCCTCTAAGCCACA 394
Query 60 CACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCT 119
|||||| || || ||||||||||| || ||||| | |||| || | |||| || ||||
Sbjct 395 CACAGGTGGTGACATTAGGTGGGATGCTGTGAACACGTTGACCTCCAAAGGAGTCCAGCT 454
Query 120 TGGAATCAGCGATTTTCGTG-TT-TTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTT 177
|| ||||||||||| || | || || |||||||| || || ||||| || || ||||||
Sbjct 455 CGGTATCAGCGATTTCCG-GCTTCTT-AAACGGCTCGGTTATGGAGACATTGGGAGTGTT 512
Query 178 TATCTTGTTGAACTCAAAGGCGCAAATCCGACT-ACATATTTCGCGATGAAAGTAATGGA 236
|| || || || |||| | | | || || | | || |||||||| |||||||| |||||
Sbjct 513 TACCTAGTCGAGCTCAGA-G-G--AA-CC-A-TCACCTATTTCGCCATGAAAGTGATGGA 565
Query 237 TAAGGCTTCTCTT-G-TGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATC 294
|||||||| ||| | | |||||||||||||| ||| ||||||| || ||||||||||||
Sbjct 566 CAAGGCTTC-CTTAGCT-AGCAGGAACAAGCTTTTGCGAGCTCAAACAGAGAGAGAGATC 623
Query 295 TTGTCTCAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAA 354
||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct 624 TTGTCTCAGCTTGATCACCCGTTCTTGCCCACTCTATACTCACACTTTGAAACAGATAAG 683
Query 355 TTCTATTGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAG 414
|| |||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||
Sbjct 684 TTTTATTGCTTGGTCATGGAGTTTTGTGGCGGTGGTAATCTCTATTCCTTGCGACAGAAG 743
Query 415 CAACCTAACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTA 474
||||| ||||||||||||||||||||||| ||||| |||||||| || |||||| | ||
Sbjct 744 CAACCAAACAAGTGTTTCACAGAAGACGCGGCAAGATTCTTTGCTTCTGAAGTGCTATTG 803
Query 475 GCGTTAGAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTA 534
|| || ||||| || |||||||| ||||| |||||||| || || |||||||| || ||
Sbjct 804 GCATTGGAGTACTTGCACATGCTAGGAATTGTATACCGTGACTTGAAGCCAGAAAATGTT 863
Query 535 CTGGTTC-GAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTC 593
|| | || |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 864 CTAG-TCAGAGATGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGCTC 922
Query 594 AGTCAATCCAACACTTGTCAAATC-T--T-T---CAA-CGGC-GGCGGAACCA-CGGGA- 642
|||| |||||| || |||||||| | | | || |||| ||||| | ||| |
Sbjct 923 CGTCAGTCCAACTCTCGTCAAATCATCCTCTGTTCATGCGGCCGGCGGCGGAAGCGGAAG 982
Query 643 -A-TCGT--TG-A------A--GAC-A--ATGCGGCGGTCCAAGGATGT-TACCAACCAT 685
| ||| || | | ||| | | |||||||| ||||| ||| | |||||| |
Sbjct 983 TAGTCGACCTGTAGGTCTCATCGACGAGGACGCGGCGGTGCAAGGTTGTAT-CCAACCGT 1041
Query 686 CCACATTCTTCCCACGAATGCTC-CAATCATCGAAGAAAAACCGTAAATCC-AAATCCGA 743
|||||||||||||||| || || || ||||| ||||| || || ||| | ||||| ||
Sbjct 1042 CCACATTCTTCCCACGCAT-CTTGCAGTCATCCAAGAAGAATCG-AAAGGCGAAATCAGA 1099
Query 744 TTTCG-A-T----G-----G-ATC-ATTACCAGAACTCATGGCAGAGCCGACGAACGTGA 790
||||| | | | | ||| || || ||||||||||||||||| |||||||| |
Sbjct 1100 TTTCGGACTCTTCGTCAACGGATCCATG-CCGGAACTCATGGCAGAGCCAACGAACGTTA 1158
Query 791 AATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAA-ACGAA 849
| |||||||| || || |||||||||||||||||||| |||||||||||| | |||
Sbjct 1159 AGTCAATGTCATTCGTTGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGA-GAA 1217
Query 850 GGTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAGCTTCT-TCA 908
|| || ||||||||||||||||||||||| || || |||||||| ||||||||||| | |
Sbjct 1218 GGACATGGAAGCGCCGTAGATTGGTGGACATTCGGAATTTTCATTTACGAGCTTCTCT-A 1276
Query 909 TGGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTAATCGGACA 968
|||||| ||||| |||||||||||||||||| || |||||| | || || || |||||
Sbjct 1277 TGGAGCGACGCCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATAGGACA 1336
Query 969 ACCTCTGAGATTCCCGGAATATTC-TCAGGTTAGCTCAAAGGCAA-AGGATTTAATCAAA 1026
| || | |||||||| || ||| ||| || ||||| ||| | || || | ||||||
Sbjct 1337 AGCTTTAAGATTCCCTGAGG-TTCCTCATGTGAGCTCGGCGGCGAGAG-ATCTCATCAAA 1394
Query 1027 GGTTTGTTGGTAAAAGAGCCGCAAAA-CAGAATTGCGTATAAGCGAGGCGCGACGGAGAT 1085
|| || || || |||||||||||||| | |||| || || || || || |||||||||||
Sbjct 1395 GGATTATTAGTTAAAGAGCCGCAAAAAC-GAATCGCTTACAAACGTGGAGCGACGGAGAT 1453
Query 1086 CAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTG-GAGAAACGCCGC 1144
||||| ||||| ||||| |||||||||||||||||| | ||||| | | | ||||||||
Sbjct 1454 TAAGCAGCATCCGTTTTTCGAAGGTGTGAATTGGGCGCTAATTCG-GAGTGCAACGCCGC 1512
Query 1145 CGCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAG-AGAAGGAGTCTTTG 1203
||||| | ||||| ||||||||||| |||||||| | ||| ||| | || |||||| ||
Sbjct 1513 CGCATGTACCGGAACCGGTGGATTTTTCGTGTTACGC-AAGCAAGGATAAAGAGTCTATG 1571
Query 1204 CCGGC 1208
||||
Sbjct 1572 GCGGC 1576
> AT5G40030.1 | Symbols: | Protein kinase superfamily protein
| chr5:16026227-16028283 FORWARD LENGTH=1500
Length=1500
Score = 172 bits (93), Expect = 6e-42
Identities = 249/321 (78%), Gaps = 23/321 (7%)
Strand=Plus/Plus
Query 267 GTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCTCAGCTT-GATCATCCTTTCTTGCCTA 325
||| ||||||||||| ||||||||||| ||| | | || |||||||||||||||||||
Sbjct 469 GTT-AGAGCTCAGACTGAGAGAGAGATTTTGGGTTTG-TTAGATCATCCTTTCTTGCCTA 526
Query 326 CTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGC-TTGGTCATGGAGTTTTGTAGC 384
||||||||||||| ||||| ||||| || || | |||| || | |||||||||||||||
Sbjct 527 CTCTTTACTCTCATTTCGAGACTGAGAAGTTTTCTTGCCTTT-TGATGGAGTTTTGTAGC 585
Query 385 GGCGGAAATCT-C-TATTC-CTTGAGACAGAAGCAACCT--AACAAGTGTTTCACAGAAG 439
|| ||| |||| | ||||| | | | ||||| || || || || |||| | |||
Sbjct 586 GGTGGAGATCTTCATATTCTCC-G-G-CAGAAACAGCCCGGAA-AACA-TTTCTCCGAAC 640
Query 440 -ACGCTGCAAGGTTCTT-TGCATCAGAAGTG-TTGTTAGCGTTAGAGTAT-TTACACATG 495
| || || ||||| || ||| || ||||| || || ||| |||||||| || || |||
Sbjct 641 TA-GCCGCCAGGTT-TTATGCTTCTGAAGTACTTCTT-GCGCTAGAGTATCTT-CATATG 696
Query 496 CTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTTCGAGATGACGGTCAC 555
| || | || ||| ||||||| ||||||||||| ||| |||| |||| || ||||||
Sbjct 697 ATGGGTGTAGTGTACAGAGATTTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCAC 756
Query 556 ATTATGCTCTCCGATTTCGAT 576
|||||||| || |||||||||
Sbjct 757 ATTATGCTTTCGGATTTCGAT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5