BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471840 Length=1298 Score E Sequences producing significant alignments: (Bits) Value AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:56158... 2084 0.0 AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-... 819 0.0 AT5G40030.1 | Symbols: | Protein kinase superfamily protein | ... 172 6e-42 > AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:5615815-5617672 FORWARD LENGTH=1566 Length=1566 Score = 2084 bits (1128), Expect = 0.0 Identities = 1244/1301 (96%), Gaps = 3/1301 (0%) Strand=Plus/Plus Query 1 ATGAGCTCACAAAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCAC 60 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 231 ATGAGCTCCCAAAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCAC 290 Query 61 ACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 ACGGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 350 Query 121 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTTTAT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 351 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTAT 410 Query 181 CTTGTTGAACTCAAAGGCGCAAATCCGACTACATATTTCGCGATGAAAGTAATGGATAAG 240 ||||||||||||||||| |||||||| || || ||||||||||||||||| ||||| ||| Sbjct 411 CTTGTTGAACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAG 470 Query 241 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCT 300 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 471 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCT 530 Query 301 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 590 Query 361 TGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAGCAACCT 420 |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 591 TGCTTGGTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCC 650 Query 421 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTAGCGTTA 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 651 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTA 710 Query 481 GAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTT 540 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 711 GAGTACTTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTT 770 Query 541 CGAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAT 600 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 CGAGACGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAC 830 Query 601 CCAACACTTGTCAAATCTTTCAACGGCGGCGGAACCACGGGAATCGTTGAAGACAATGCG 660 ||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||| Sbjct 831 CCAACACTTGTCAAATCTTTCAACGGCGGTGGAACCACCGGAATCATTGACGACAATGCG 890 Query 661 GCGGTCCAAGGATGTTACCAACCATCCACATTCTTCCCACGAATGCTCCAATCATCGAAG 720 ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 891 GCGGTACAAGGATGTTACCAACCATCCGCATTCTTCCCACGAATGCTCCAATCCTCGAAG 950 Query 721 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCATTACCAGAACTCATGGCAGAGCCG 780 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 951 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCGTTACCAGAACTCATGGCAGAGCCG 1010 Query 781 ACGAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 840 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 ACAAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 1070 Query 841 AAAAACGAAGGTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAG 900 |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct 1071 AAAAACGAAGGTCACGGAAGCGCCGTCGATTGGTGGACGTTCGGGATATTCATCTACGAG 1130 Query 901 CTTCTTCATGGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTA 960 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1131 CTTCTTCATGGAGCAACACCATTTAAAGGACAAGGAAACAAAGCCACGCTTTATAATGTA 1190 Query 961 ATCGGACAACCTCTGAGATTCCCGGAATATTCTCAGGTTAGCTCAAAGGCAAAGGATTTA 1020 |||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||| Sbjct 1191 ATCGGACAACCTCTTAGATTCCCGGAATATTCTCAGGTTAGCTCGACGGCGAAGGATTTG 1250 Query 1021 ATCAAAGGTTTGTTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1080 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 ATCAAAGGTTTATTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1310 Query 1081 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACG 1140 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACA 1370 Query 1141 CCGCCGCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAGAGAAGGAGTCT 1200 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1371 CCGCCACATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAGGAGAAGGAGTCT 1430 Query 1201 TTGCCGGCGGCGGCAACCGAAAAGAAGAGCAAAACGTGTGATGAAGCTCA---GAGCGGT 1257 |||||| |||||||||| |||||||||||||| | || |||||||||| | ||||||| Sbjct 1431 TTGCCGCCGGCGGCAACGGAAAAGAAGAGCAAGATGTTTGATGAAGCTAATAAGAGCGGT 1490 Query 1258 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCTATA 1298 ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1491 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCCATA 1531 > AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-29812218 REVERSE LENGTH=1902 Length=1902 Score = 819 bits (443), Expect = 0.0 Identities = 1005/1265 (79%), Gaps = 84/1265 (7%) Strand=Plus/Plus Query 1 ATGAGCTCACA-AAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCA 59 ||||||||| | |||||||| || || ||||| ||||| |||| |||||||||| || Sbjct 339 ATGAGCTCA-AGAAGCAACAGCATTGAGAGCACGTCCTC---TAATCCCTCTAAGCCACA 394 Query 60 CACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCT 119 |||||| || || ||||||||||| || ||||| | |||| || | |||| || |||| Sbjct 395 CACAGGTGGTGACATTAGGTGGGATGCTGTGAACACGTTGACCTCCAAAGGAGTCCAGCT 454 Query 120 TGGAATCAGCGATTTTCGTG-TT-TTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTT 177 || ||||||||||| || | || || |||||||| || || ||||| || || |||||| Sbjct 455 CGGTATCAGCGATTTCCG-GCTTCTT-AAACGGCTCGGTTATGGAGACATTGGGAGTGTT 512 Query 178 TATCTTGTTGAACTCAAAGGCGCAAATCCGACT-ACATATTTCGCGATGAAAGTAATGGA 236 || || || || |||| | | | || || | | || |||||||| |||||||| ||||| Sbjct 513 TACCTAGTCGAGCTCAGA-G-G--AA-CC-A-TCACCTATTTCGCCATGAAAGTGATGGA 565 Query 237 TAAGGCTTCTCTT-G-TGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATC 294 |||||||| ||| | | |||||||||||||| ||| ||||||| || |||||||||||| Sbjct 566 CAAGGCTTC-CTTAGCT-AGCAGGAACAAGCTTTTGCGAGCTCAAACAGAGAGAGAGATC 623 Query 295 TTGTCTCAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAA 354 ||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 624 TTGTCTCAGCTTGATCACCCGTTCTTGCCCACTCTATACTCACACTTTGAAACAGATAAG 683 Query 355 TTCTATTGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAG 414 || |||||||||||||||||||||||| |||| || ||||||||||||||| |||||||| Sbjct 684 TTTTATTGCTTGGTCATGGAGTTTTGTGGCGGTGGTAATCTCTATTCCTTGCGACAGAAG 743 Query 415 CAACCTAACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTA 474 ||||| ||||||||||||||||||||||| ||||| |||||||| || |||||| | || Sbjct 744 CAACCAAACAAGTGTTTCACAGAAGACGCGGCAAGATTCTTTGCTTCTGAAGTGCTATTG 803 Query 475 GCGTTAGAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTA 534 || || ||||| || |||||||| ||||| |||||||| || || |||||||| || || Sbjct 804 GCATTGGAGTACTTGCACATGCTAGGAATTGTATACCGTGACTTGAAGCCAGAAAATGTT 863 Query 535 CTGGTTC-GAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTC 593 || | || |||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 864 CTAG-TCAGAGATGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGCTC 922 Query 594 AGTCAATCCAACACTTGTCAAATC-T--T-T---CAA-CGGC-GGCGGAACCA-CGGGA- 642 |||| |||||| || |||||||| | | | || |||| ||||| | ||| | Sbjct 923 CGTCAGTCCAACTCTCGTCAAATCATCCTCTGTTCATGCGGCCGGCGGCGGAAGCGGAAG 982 Query 643 -A-TCGT--TG-A------A--GAC-A--ATGCGGCGGTCCAAGGATGT-TACCAACCAT 685 | ||| || | | ||| | | |||||||| ||||| ||| | |||||| | Sbjct 983 TAGTCGACCTGTAGGTCTCATCGACGAGGACGCGGCGGTGCAAGGTTGTAT-CCAACCGT 1041 Query 686 CCACATTCTTCCCACGAATGCTC-CAATCATCGAAGAAAAACCGTAAATCC-AAATCCGA 743 |||||||||||||||| || || || ||||| ||||| || || ||| | ||||| || Sbjct 1042 CCACATTCTTCCCACGCAT-CTTGCAGTCATCCAAGAAGAATCG-AAAGGCGAAATCAGA 1099 Query 744 TTTCG-A-T----G-----G-ATC-ATTACCAGAACTCATGGCAGAGCCGACGAACGTGA 790 ||||| | | | | ||| || || ||||||||||||||||| |||||||| | Sbjct 1100 TTTCGGACTCTTCGTCAACGGATCCATG-CCGGAACTCATGGCAGAGCCAACGAACGTTA 1158 Query 791 AATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAA-ACGAA 849 | |||||||| || || |||||||||||||||||||| |||||||||||| | ||| Sbjct 1159 AGTCAATGTCATTCGTTGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGA-GAA 1217 Query 850 GGTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAGCTTCT-TCA 908 || || ||||||||||||||||||||||| || || |||||||| ||||||||||| | | Sbjct 1218 GGACATGGAAGCGCCGTAGATTGGTGGACATTCGGAATTTTCATTTACGAGCTTCTCT-A 1276 Query 909 TGGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTAATCGGACA 968 |||||| ||||| |||||||||||||||||| || |||||| | || || || ||||| Sbjct 1277 TGGAGCGACGCCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATAGGACA 1336 Query 969 ACCTCTGAGATTCCCGGAATATTC-TCAGGTTAGCTCAAAGGCAA-AGGATTTAATCAAA 1026 | || | |||||||| || ||| ||| || ||||| ||| | || || | |||||| Sbjct 1337 AGCTTTAAGATTCCCTGAGG-TTCCTCATGTGAGCTCGGCGGCGAGAG-ATCTCATCAAA 1394 Query 1027 GGTTTGTTGGTAAAAGAGCCGCAAAA-CAGAATTGCGTATAAGCGAGGCGCGACGGAGAT 1085 || || || || |||||||||||||| | |||| || || || || || ||||||||||| Sbjct 1395 GGATTATTAGTTAAAGAGCCGCAAAAAC-GAATCGCTTACAAACGTGGAGCGACGGAGAT 1453 Query 1086 CAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTG-GAGAAACGCCGC 1144 ||||| ||||| ||||| |||||||||||||||||| | ||||| | | | |||||||| Sbjct 1454 TAAGCAGCATCCGTTTTTCGAAGGTGTGAATTGGGCGCTAATTCG-GAGTGCAACGCCGC 1512 Query 1145 CGCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAG-AGAAGGAGTCTTTG 1203 ||||| | ||||| ||||||||||| |||||||| | ||| ||| | || |||||| || Sbjct 1513 CGCATGTACCGGAACCGGTGGATTTTTCGTGTTACGC-AAGCAAGGATAAAGAGTCTATG 1571 Query 1204 CCGGC 1208 |||| Sbjct 1572 GCGGC 1576 > AT5G40030.1 | Symbols: | Protein kinase superfamily protein | chr5:16026227-16028283 FORWARD LENGTH=1500 Length=1500 Score = 172 bits (93), Expect = 6e-42 Identities = 249/321 (78%), Gaps = 23/321 (7%) Strand=Plus/Plus Query 267 GTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCTCAGCTT-GATCATCCTTTCTTGCCTA 325 ||| ||||||||||| ||||||||||| ||| | | || ||||||||||||||||||| Sbjct 469 GTT-AGAGCTCAGACTGAGAGAGAGATTTTGGGTTTG-TTAGATCATCCTTTCTTGCCTA 526 Query 326 CTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGC-TTGGTCATGGAGTTTTGTAGC 384 ||||||||||||| ||||| ||||| || || | |||| || | ||||||||||||||| Sbjct 527 CTCTTTACTCTCATTTCGAGACTGAGAAGTTTTCTTGCCTTT-TGATGGAGTTTTGTAGC 585 Query 385 GGCGGAAATCT-C-TATTC-CTTGAGACAGAAGCAACCT--AACAAGTGTTTCACAGAAG 439 || ||| |||| | ||||| | | | ||||| || || || || |||| | ||| Sbjct 586 GGTGGAGATCTTCATATTCTCC-G-G-CAGAAACAGCCCGGAA-AACA-TTTCTCCGAAC 640 Query 440 -ACGCTGCAAGGTTCTT-TGCATCAGAAGTG-TTGTTAGCGTTAGAGTAT-TTACACATG 495 | || || ||||| || ||| || ||||| || || ||| |||||||| || || ||| Sbjct 641 TA-GCCGCCAGGTT-TTATGCTTCTGAAGTACTTCTT-GCGCTAGAGTATCTT-CATATG 696 Query 496 CTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTTCGAGATGACGGTCAC 555 | || | || ||| ||||||| ||||||||||| ||| |||| |||| || |||||| Sbjct 697 ATGGGTGTAGTGTACAGAGATTTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCAC 756 Query 556 ATTATGCTCTCCGATTTCGAT 576 |||||||| || ||||||||| Sbjct 757 ATTATGCTTTCGGATTTCGAT 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63855093240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5