BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471841
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16445.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1354 0.0
> AT1G16445.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:5617811-5619334
FORWARD LENGTH=856
Length=856
Score = 1354 bits (733), Expect = 0.0
Identities = 819/860 (95%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTGGGTTCTTTC-AGTCAGAGATGTCAATGTTATCCTCTACGTTGGCGCGCTC 59
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGGCTGGGTTCTTTCAAG-CAGAGATGTCAATTTTATCCTCTACGTTGGCGCGCTC 59
Query 60 ATACTCTATT-CCCATCCGCAAAACGCTTATGACCTTCGGTTTTCGAATTGCAGTGCAAC 118
|||||| || || ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 60 ATACTC-GTTACCTATCCGCAAAACGCTTATGACCTTCGATTTTCGAATTGCAATGCAAC 118
Query 119 GAAACCCTTGTCCCAGAATTCGACGTTCTCGTGTAGCTGCTTTTAGCTCGTCTCCTTCGC 178
|||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 119 GAAACCCTTGTCTCAGAATTCGACGTTCTTGTGTAGCTGCTTTTAGCTCGACTCCTTCGC 178
Query 179 ATTCACGAGATTTCCCAATTCGAGGAGTAGAGGATGTTTTTGTTGGTTATCTATTTGGGA 238
|||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 ATTCACGAAATTTTCCAATTCGAGGACTAGAGGATGTTTTTGTTGGTTATCTATTTGGGA 238
Query 239 GGAAGAAGGCAACAGAAGTAGCTCATGTTGTGTGGGAGCAGGTAATCCAAAAGGGGGATA 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAAGAAGGCAACGGAAGTAGCTCATGTTGTGTGGGAGCAGGTAATCCAAAAGGGGGATA 298
Query 299 TGGTCATTGATGCTACGTGTGGAAACGGGAACGATACTTTAGCAATGTTGAAGATGGTTA 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGTCATTGATGCTACCTGTGGAAACGGGAACGATACTTTAGCAATGTTGAAGATGGTTA 358
Query 359 TGAATGATTCTGTTGGTTGTGGTGGCTATGTCTATGCTATGGACATTCAAAAAGATGCCA 418
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TGCATGATTCTGTTGGTTGTGGTGGTTATGTCTATGCTATGGACATTCAAAAAGATGCCA 418
Query 419 TTGAGAGCACTTCATCTTTGCTGGATCAAGCCGTTGGTTCAAAAGAGAAGGAATGCGTCA 478
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGAAAGCACTTCATCTTTGCTCGATCAAGCCGTTGGTTCAAAAGAGAAGGAATGCGTCA 478
Query 479 AACTTTTTAACATCTGTCATAGTAAAATGGGAGAGATTGTCCCTGAAAACTCCCGTA-TA 537
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 479 AACTTTTTAACCTCTGTCATAGTAAAATGGGAGAGATTGTCCCTGAAAACGCCCG-AGTG 537
Query 538 AGGATGGTTGCATTCAATCTGGGGTATCTTCCAGGGGGCAACAAGTCGATAATCACTGTC 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 538 AGGATGGTTGCATTCAATCTGGGGTATCTTCCAGGAGGCAACAAGTCGATAATCACTCTC 597
Query 598 TCGGATACAACTTTAGCGGCATTGAAGGCTGCTGAGAGAATCTTAATGCCCGGTGGCCTC 657
||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 598 TCGGATACAACATTATCGGCATTGAAAGCTGCTGAGAGAATCTTAAAGCCCGGTGGTCTC 657
Query 658 ATCAGCTTGGTGGTTTACATTGGCCATCCTGGTGGAAGAGAAGAGTTAGAAGTGGTTGAA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCAGTTTGGTGGTTTACATTGGCCATCCTGGTGGAAGAGAAGAGTTAGAAGTGGTTGAA 717
Query 718 GCTTTTGGGTCGAGTTTACCTGTCAGTGATTGGGTCTGCTGCAAATTCCAAATGTTGAAC 777
|||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 718 GCTTTTGGGTCGGGTTTACCGGTCAGTGATTGGATCTGCTGCAAATTCCAAATGTTGAAC 777
Query 778 CGACCGTTAGCTCCAGTTCTTGTTTTCATGTTCAAGAGAGAAAACTGAAAAACTGATTTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 CGACCGTTAGCTCCAGTTCTTGTTTTCATGTTCAAGAGAGAAAACTGAAAAG-TGATTTA 836
Query 838 TTTTGATCTACCAGAAGCTT 857
|||||||| |||||||||||
Sbjct 837 TTTTGATCCACCAGAAGCTT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5