BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471845
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16470.1 | Symbols: PAB1 | proteasome subunit PAB1 | chr1:56... 1520 0.0
AT1G79210.1 | Symbols: | N-terminal nucleophile aminohydrolase... 881 0.0
> AT1G16470.1 | Symbols: PAB1 | proteasome subunit PAB1 | chr1:5622786-5625643
FORWARD LENGTH=1059
Length=1059
Score = 1520 bits (823), Expect = 0.0
Identities = 912/952 (96%), Gaps = 18/952 (2%)
Strand=Plus/Plus
Query 226 AGCTTTCGCCGATTTGATTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACC 285
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACC 180
Query 286 ACTTTCAGCCCATCTGGGAAGCTGGTTCAGATAGAACATGCTCTTACAGCTGTTGGATCT 345
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 ACTTTCAGCCCATCTGGTAAGCTGGTGCAGATAGAACATGCCCTTACAGCTGTTGGATCT 240
Query 346 GGCCAAACATCTTTGGGGATTAAAGCTTCTAATGGAGTTGTCATTGCAACTGAAAAGAAA 405
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCCAAACATCTTTAGGGATTAAAGCTTCTAATGGAGTTGTCATTGCAACTGAAAAGAAG 300
Query 406 TTGCCTTCTATTCTGGTTGATGAAGCATCTGTTCAAAAAATTCAGCATTTGACTCCTAAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGCCTTCTATTCTGGTTGATGAAGCATCTGTTCAAAAAATTCAGCATTTGACTCCTAAT 360
Query 466 ATTGGAGTTGTATACAGTGGCATGGGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGG 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGGAGTTGTTTACAGTGGCATGGGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGG 420
Query 526 AAACAGGCTGAGCAATATCTCCGACTGTACAAAGAACCCATCCCTGTTACCCAACTTGTA 585
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACAGGCTGAGCAATATCTTCGTCTGTACAAAGAACCCATCCCTGTTACCCAACTTGTA 480
Query 586 AGGGAAACCGCTACTGTTATGCAAGAGTTTACTCAATCGGGTGGTGTTAGGCCTTTCGGG 645
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AGGGAAACCGCTACTGTTATGCAAGAGTTTACTCAATCGGGAGGTGTTAGGCCTTTCGGG 540
Query 646 GTTTCCCTGCTGGTGGCTGGATATGACGACAAGGGTCCCCAATTGTATCAGGTGGATCCA 705
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 541 GTTTCCTTGCTGGTGGCTGGATATGATGACAAGGGTCCACAATTGTATCAGGTGGATCCA 600
Query 706 TCTGGCTCTTATTTCTCCTGGAAAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTGGCTCTTATTTCTCCTGGAAAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAA 660
Query 766 ACCTTCCTTGAGAAAAGGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCTTCCTTGAGAAAAGGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCG 720
Query 826 ATACTGACATTGAAAGAAGGCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATACTGACATTGAAAGAAGGCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGC 780
Query 886 AAAATCGGTGCTGACAAAGTTTTCAGGGTACTAACACCAGCGGAGATCGATGATTACCTT 945
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 AAAATCGGTGCTGACAAAGTTTTCAGGGTACTAACACCAGCAGAGATCGATGATTACCTT 840
Query 946 GCTGAAGTCGAGTAACTCCTAGCATAGTCTAGCAACAAACATGCGTTTAAGACAGGAATT 1005
||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||
Sbjct 841 GCTGAAGTCGAGTAACTCCCAGCATAGTCTAGCAACAAA---G--TTTAAGACCGGAATT 895
Query 1006 TCGTGGCATTTGCAGAGTCTTAAAGAGTTGtttttttCTGTAAAACTT-GGATCTTTAAA 1064
||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 896 TCGTGGCATTTACAG--TCTTAAAGAGTTGTTTTTT-CTGTAAAACTTTGGATCTTTAAA 952
Query 1065 TAGTTTGTTGCTGAACACAAGCTGAGTGTTTCTTATGATTCAATAACTAATGAAATCTGT 1124
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 953 TAGTTTGTTGCTGAACACAAGCTGAGTGTCTCT-------CAATAACTAATGAAATCTGT 1005
Query 1125 TTCtttttttCTTTCACTCAGTGAAGGTCTCAGAGAAATCTTAGAGTAGTCT 1176
|||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1006 TTCTTTTTTTCT--CACTCAGTGAAGGTTTCAGAGAAATCTTATAGTAGTCT 1055
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTGCAACTAATCGCTTGTTCGATCTCGAAGCTGAAGCTAAAG 50
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 73 CTCTCTCTCTGCAACTAATCACTTGTTCGATCTCGAAGCTGAAGCTAAAG 122
> AT1G79210.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr1:29796081-29798783
REVERSE LENGTH=1061
Length=1061
Score = 881 bits (477), Expect = 0.0
Identities = 637/714 (89%), Gaps = 12/714 (2%)
Strand=Plus/Plus
Query 253 ATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGCCCATCTGGGAAGCTGGTT 312
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 149 ATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGAAGCTGGTT 208
Query 313 CAGATAGAACATGCTCTTACAGCTGTTGGATCTGGCCAAACATC-TTTGGGGATTAAAGC 371
|||||||||||||| || |||||||||||||| ||||||||||| || || ||||||||
Sbjct 209 CAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCACTT-GGAATTAAAGC 267
Query 372 TTCTAATGGAGTTGTCATTGCAACTGAAAAGAAA-TTGCCTTCTAT-TCTGGTTGATGAA 429
||| |||||||||||||||||||||||||||||| || |||||||| | |||||||||||
Sbjct 268 TTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTT-CCTTCTATAT-TGGTTGATGAA 325
Query 430 GCATCTGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTATACAGTGGCATG 489
|| ||||||||||| ||||| ||||||||||| || |||||| ||| |||||||| |||
Sbjct 326 GCGTCTGTTCAAAAGATTCAACATTTGACTCCCAACATTGGAACTGTTTACAGTGGTATG 385
Query 490 GGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGGAAACAGGCTGAGCAATATCTCCGA 549
||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 386 GGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATCTCCGT 445
Query 550 CTGTACAAAGAACCCATCCCTGTTACCCAACTTGTAAGGGAAACCGCTACTGTTATGCAA 609
|||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||||||
Sbjct 446 CTGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTGATGCAA 505
Query 610 GAGTTTACTCAATCGGGTGGTGTTAGGCC-TTTCGGGGTTTCCCTGCTGGTGGCTGGATA 668
||||| ||||||||||||||||||||||| ||| || ||||| || ||||||||||| ||
Sbjct 506 GAGTTCACTCAATCGGGTGGTGTTAGGCCGTTT-GGAGTTTCTCTACTGGTGGCTGGGTA 564
Query 669 TGACGACAAGGGTCCCCAATTGTATCAGGTGGATCCATCTGGCTCTTATTTCTCCTGGAA 728
||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 565 TGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCATGGAA 624
Query 729 AGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGGTACAC 788
|||||| || ||||| ||||| ||||| |||||||| || || |||||||| ||||||||
Sbjct 625 AGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACAC 684
Query 789 AGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGCTT 848
|||||| ||||||||||| |||||||||||||| || ||| |||||||||| ||||| ||
Sbjct 685 AGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGG-TT 743
Query 849 T-GAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTT 907
| |||||||| |||||||||||||| || || ||||||||||||||| ||||||||||||
Sbjct 744 TCGAGGGAGAAATCTCAAGCAAAAACATCGAGATTGGCAAAATCGGTACTGACAAAGTTT 803
Query 908 TCAGGGTACTAACACCAGCGGAGATCGATGATTACCTTG-CTGAAGTCGAGTAA 960
||||||| ||||||||||| || |||||||||||| ||| ||||||||||||||
Sbjct 804 TCAGGGTGCTAACACCAGCAGAAATCGATGATTAC-TTGGCTGAAGTCGAGTAA 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5